Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30114
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   119   4e-28
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    44   3e-05
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    38   0.002
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    33   0.054
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    26   6.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.2  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   8.2  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  119 bits (287), Expect = 4e-28
 Identities = 47/78 (60%), Positives = 68/78 (87%)
 Frame = +2

Query: 278 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 457
           V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M  MFKK+NA EK+VGWYHTGP+L  +D+
Sbjct: 54  VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDL 113

Query: 458 AINELIRRYCPNSVLVIL 511
            IN L+++Y PN VLVI+
Sbjct: 114 EINNLLKKYIPNPVLVII 131



 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = +1

Query: 511 DAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIKGTTV 690
           D KPK +GLPT AY A++E+ DDG+ +SRTF H+PS I           HLLRD +  +V
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191

Query: 691 GSLSQRIT 714
           G+L+ R+T
Sbjct: 192 GTLATRVT 199


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +2

Query: 281 LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDIA 460
           +++ + FAVP +E  +   V   + +Y   MY +  K N RE VVGWY T P L      
Sbjct: 62  IEIKSCFAVPHNESSEQVEV---EMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSAL 118

Query: 461 INEL 472
           I  L
Sbjct: 119 IQNL 122


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +2

Query: 287 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK----LHQND 454
           V + FA+P  +     SV  +D  + +NM  M K+    E VVGWYH+ P     L   D
Sbjct: 68  VVDVFAMP--QSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVD 125

Query: 455 IAINELIRRYCPNSVLVIL 511
           I   +   +  P +V V++
Sbjct: 126 INTQQSFEQLTPRAVAVVV 144


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 281 LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 436
           L + +SFA+P +  +   +      +Y    + + K V   E V+GWYH+ P
Sbjct: 70  LIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHP 121


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 36  MNNNFVI*NRTATNPEYLSENTYVKIIKMPSQE 134
           + NNFV  N  A   E   + TY+ +  MPS E
Sbjct: 49  LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 321 TTKTNLSGSLTMIT 362
           TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 287 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 436
           V +S +  F  DD +     L  + +E ++ +FK+ NA  +++GW ++ P
Sbjct: 794 VISSLSAIFIRDDTEND---LVTELVEKLF-LFKQYNACMQLIGWLNSDP 839


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 351 SRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPI 253
           S  Q+ LSL +SSNGT  +  T   P+ L+  I
Sbjct: 182 SSKQSLLSLKNSSNGTVYVSTTLPCPVELKPNI 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,068
Number of Sequences: 5004
Number of extensions: 55009
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)