Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30114
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 72 4e-13
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 46 3e-05
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 39 0.005
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 39 0.005
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 38 0.008
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 33 0.23
07_01_0755 - 5806614-5806939,5807039-5809415 31 1.2
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 30 1.6
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 30 2.1
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707... 29 3.7
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 28 6.4
06_03_0602 - 22666227-22668740 28 6.4
10_06_0190 + 11628375-11628421,11628560-11628714,11628958-116290... 28 8.5
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 72.1 bits (169), Expect = 4e-13
Identities = 27/44 (61%), Positives = 39/44 (88%)
Frame = +2
Query: 269 AKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNA 400
++G +DV+NS+AVPF+EDDKD +WFLDH+Y E+M+ MFK++NA
Sbjct: 51 SRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINA 94
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 658 HLLRDIKGTTVGSLSQRIT 714
HLLRD+K TT+ +L+ +T
Sbjct: 166 HLLRDVKDTTISTLATEVT 184
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 275 GVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTG 433
G + V NS+ VP +E + LD +Y NMY KVN +E +VGW+ TG
Sbjct: 55 GTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVNPKEVIVGWFSTG 104
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 287 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK----LHQND 454
V + FA+P + SV +DH + NM M K+ E VVGWYH+ P L D
Sbjct: 67 VVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD 124
Query: 455 IAINELIRRYCPNSVLVIL 511
I + P +V V++
Sbjct: 125 INTQQSFEALNPRAVAVVI 143
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 287 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK----LHQND 454
V + FA+P + SV +DH + NM M K+ E VVGWYH+ P L D
Sbjct: 67 VVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD 124
Query: 455 IAINELIRRYCPNSVLVIL 511
I + P +V V++
Sbjct: 125 INTQQSFEALNPRAVAVVI 143
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/91 (30%), Positives = 43/91 (47%)
Frame = +2
Query: 248 CSMGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYH 427
C +G R + V ++ NSF + D LD +LE ++KKV V+GWY
Sbjct: 72 CVIGVQRGRTV-EIFNSFELVLDPVSGT-----LDRAFLEKKQELYKKVFPDFYVLGWYS 125
Query: 428 TGPKLHQNDIAINELIRRYCPNSVLVILMLN 520
TG + D+ I++ + N V L+LN
Sbjct: 126 TGSDVRDTDMQIHKALMDI--NESPVYLLLN 154
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 278 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHT 430
VL+V+N F P EDD++ +Y M ++VN VGWY +
Sbjct: 69 VLEVTNCFPFPMREDDEEADAD--GANYQLEMMRCLREVNVDNNTVGWYQS 117
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 533 PRSLGLASKLQVLNLGNNA 477
P LGL+SKLQVLNL +NA
Sbjct: 208 PSGLGLSSKLQVLNLHSNA 226
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 30.3 bits (65), Expect = 1.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -3
Query: 645 FFSLLCTNFTWNMFKGPRSWCTIIVYFL 562
F++++C W +GP+ W ++YF+
Sbjct: 440 FWNIICVTAAWIKGEGPKIWFLAVIYFI 467
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +2
Query: 242 SRCSMGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGW 421
S C +G R G +DVS+ + + D LE ++KK V+GW
Sbjct: 71 SGCVIGVRRG-GTVDVSDILDILILHGPDPAT---FDRALLEKDQEIYKKAFPDLSVLGW 126
Query: 422 YHTGPKLHQNDIAIN 466
Y G +H D+ I+
Sbjct: 127 YSIGTNVHATDMGIH 141
>03_02_0281 -
7069847-7069876,7070152-7070218,7071320-7071445,
7071727-7071916,7072008-7072110
Length = 171
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 348 RNQTDLSLSSSSNGTAKLFDTSKTPLALQQPIEHRLLVSDSRFYSC 211
RN D SL S +G F L P++ RLL DSR +SC
Sbjct: 97 RNFKDKSLRSPLSGPEAFFSEEMQD-KLWGPLDMRLLPVDSRIFSC 141
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 658 HLLRDIKGTTVGSLSQRIT 714
HLL D+K TT+G+L+ +T
Sbjct: 579 HLLMDVKDTTIGTLATEVT 597
>06_03_0602 - 22666227-22668740
Length = 837
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 533 PRSLGLASKLQVLNLGNNA 477
P SLG+A LQV+NL +NA
Sbjct: 416 PTSLGIAKNLQVINLRDNA 434
>10_06_0190 +
11628375-11628421,11628560-11628714,11628958-11629086,
11629234-11629508
Length = 201
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 341 WFLDHDYLENMYGMFKKVNAREKVVGWY 424
WFLD Y +N + + ++ AR WY
Sbjct: 12 WFLDGMYSDNSFSLETRIVARNSRAQWY 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,010
Number of Sequences: 37544
Number of extensions: 329347
Number of successful extensions: 958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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