Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30114
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   146   1e-35
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    33   0.27 
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    31   0.62 
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione ...    29   4.4  
AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    28   5.8  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    28   5.8  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  146 bits (354), Expect = 1e-35
 Identities = 62/86 (72%), Positives = 73/86 (84%)
 Frame = +2

Query: 254 MGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTG 433
           +G  +    LD+ NSFAVPFDEDDKDKS WFLD DYLE+MYGMF KV A+EK+VGWYHTG
Sbjct: 72  LGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMYGMFYKVAAKEKIVGWYHTG 131

Query: 434 PKLHQNDIAINELIRRYCPNSVLVIL 511
           PKLH+NDIAINE ++R+CPN VLVI+
Sbjct: 132 PKLHKNDIAINEQLKRFCPNPVLVII 157



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 43/68 (63%), Positives = 50/68 (73%)
 Frame = +1

Query: 511 DAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIKGTTV 690
           DA+PK++GLPTEAY  V+EVHDDGTP  +TFEHVPS+I           HLLRDIK  T 
Sbjct: 158 DAEPKNIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTA 217

Query: 691 GSLSQRIT 714
           G+LSQRIT
Sbjct: 218 GTLSQRIT 225



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +3

Query: 198 DHFNRMSKIGNQKRVVGVL 254
           DHFNR+SK  + KRVVGVL
Sbjct: 53  DHFNRVSKTQSVKRVVGVL 71


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 272 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHT 430
           KG + V+N FA+PF+E + D  +   D  + + M    KK +  E+ VGW+ T
Sbjct: 47  KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKTSPNEQPVGWFLT 96


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +2

Query: 281 LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPK----LHQ 448
           ++V++ FA+P  +     +V  +D  Y      + K V   E VVGWYH+ P     L  
Sbjct: 65  INVTDVFAMP--QSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSS 122

Query: 449 NDIAINELIRRYCPNSVLVIL 511
            D+   +      P +V V++
Sbjct: 123 VDVNTQQSFEALHPRAVAVVV 143


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 281 LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 436
           ++V + FA+P  +     SV  +D  +   M  M K+    E VVGWYH+ P
Sbjct: 69  VNVIDVFAMP--QSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHP 118


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 278 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 436
           +LDV   FA+P +  +   +     ++Y+     M      +EKVVGWYH+ P
Sbjct: 93  ILDV---FALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHP 142


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 357 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 274
           +WS  +T L  S S++G+ KL+DT   P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309


>AC024200-13|AAF36004.1|  214|Caenorhabditis elegans Glutathione
           s-transferase protein43 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 386 KKVNAREKVVGWYHTGPKLHQNDIAINELIRR----YCPNSVLVILMLNLKILVYRLKLT 553
           K +N +E   G +     +++  +A+ EL+++    YC    L I  +NL  ++Y  K+ 
Sbjct: 117 KMLNEKEPGYGDFWCNHFVNKGFLALEELLKKHSGKYCVGDQLTIADINLPSIIYNAKIY 176

Query: 554 K 556
           K
Sbjct: 177 K 177


>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 368 NMYGMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYC-PNSVLVILMLNLKILVYRL 544
           N YG    ++A E ++   H   K +  D+ +  + +R C P    V+L  NL  L+ +L
Sbjct: 23  NNYGYVIMLSAAEDILSEQHGKVKSNATDLCLPAITKRECKPPVAEVLLSDNLPSLIVKL 82


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 368 NMYGMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYC-PNSVLVILMLNLKILVYRL 544
           N YG    ++A E ++   H   K +  D+ +  + +R C P    V+L  NL  L+ +L
Sbjct: 23  NNYGYVIMLSAAEDILSEQHGKVKSNATDLCLPAITKRECKPPVAEVLLSDNLPSLIVKL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,447
Number of Sequences: 27780
Number of extensions: 307379
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)