Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30114
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.54 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.54 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.94 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 323 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 457
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 323 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 457
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = +2

Query: 410 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLV 505
           ++ W   GP+ H+    I ++  +Y P  +++
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPTILMM 348


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +2

Query: 335 SVWFLDHDY-LENMYGMF 385
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 616  LEHVQRSSKLVYHHRVLPLLL 554
            LEH     +L  HHR LP +L
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVL 1108


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
 Frame = +2

Query: 335 SVWFLDHDY-LEN 370
           S W+L+HDY LEN
Sbjct: 206 SGWYLNHDYNLEN 218


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 98 IFT*IFGICCCSILYYKVIIH 36
          IF  +F +C   IL   V+IH
Sbjct: 14 IFNFVFAVCGLGILTLGVLIH 34


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 323 RLHQTELRSCSIHLRRLWLSN 261
           + H+  L +CS + ++L LSN
Sbjct: 48  KAHKVVLSACSSYFQKLLLSN 68


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 529 LGLPTEAYQAVEEVHD 576
           LGL TE YQAV+E+HD
Sbjct: 330 LGL-TE-YQAVKEMHD 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,818
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)