Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30113
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 152 5e-38
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 38 0.002
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 35 0.011
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 33 0.045
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 31 0.14
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 31 0.14
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 31 0.24
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 31 0.24
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.24
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 30 0.42
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 30 0.42
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 29 0.56
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.3
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 27 3.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.0
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.9
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 3.9
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 5.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 5.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.9
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 26 6.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 6.9
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 9.1
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 9.1
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 9.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.1
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 152 bits (369), Expect = 5e-38
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +2
Query: 257 CVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTAL 436
CVKKCPF AI IIN+P+NLE THRYS NSFKLHRLP PRPG+VLGLVG NGIGKSTAL
Sbjct: 61 CVKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTAL 120
Query: 437 KILAGKQKPNLGRYTDPPDWQEIL 508
KIL+GK KPNLGRY +PPDW E++
Sbjct: 121 KILSGKMKPNLGRYDNPPDWAEVV 144
Score = 103 bits (246), Expect = 4e-23
Identities = 43/65 (66%), Positives = 53/65 (81%)
Frame = +3
Query: 81 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGFV 260
++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P D+IA ISE LCIGCG
Sbjct: 2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGIC 61
Query: 261 *RNVP 275
+ P
Sbjct: 62 VKKCP 66
Score = 96.3 bits (229), Expect = 4e-21
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Frame = +1
Query: 466 LGSLH*PSRLARDTSHFRGSELQNYFTKILEDDLKALIKPQYVDQIPKAVK---GTVGQL 636
LG P A +FRGSELQN+FTK++ED++KALIKPQYVD IP+A+K TV L
Sbjct: 131 LGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDKTVSGL 190
Query: 637 LDKKDEMKNQSVICRMLDLSHIRDREIAALSGGELQRFACAMCA 768
+ + N + DL ++ +RE+ LSGGELQRFA A A
Sbjct: 191 IKARANNNNFEEVMDHTDLQNLLNREVGHLSGGELQRFAIAAVA 234
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +1
Query: 562 DLKALIKPQYVDQIPKAVKGTVGQLLDKKDEM-----KNQSVICRMLDLSHIRDREIAAL 726
DLK +KPQ + PK +GTV L KK K QS +C+ L + +I D+E+ L
Sbjct: 400 DLKISMKPQTI--APK-FQGTVRMLFLKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNL 456
Query: 727 SGGELQRFACAM 762
SGGELQR A +
Sbjct: 457 SGGELQRVAICL 468
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 386 EVLGLVGQNGIGKSTALKILA 448
E++ L+G+NG GK+T K +A
Sbjct: 376 EIIVLLGENGTGKTTFCKWMA 396
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 371 IPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYT-DPPDWQEILLISGALSCKITSQ 547
+ +PG+V+ LVG++G GKST ++IL N G T D D + + L S S + Q
Sbjct: 606 VAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSLRSSIGVVPQ 665
Query: 548 RSS 556
S+
Sbjct: 666 DST 668
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 365 LPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
L +P+ L LVG NG GKST LK+L+GK G
Sbjct: 25 LDLPKGSRTL-LVGANGAGKSTLLKLLSGKSLAKAG 59
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 33.1 bits (72), Expect = 0.045
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKPNLG 472
+ ++G NG GKST +K+L G+ P +G
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVG 729
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKPNLGRYTDPPD 493
+ ++G NG GKST +K+L G+ P G+ P+
Sbjct: 722 VAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPN 755
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPN 466
G G+VG NG GKST L+ + + N
Sbjct: 470 GHRYGVVGHNGCGKSTLLRAIGDYKVEN 497
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 31.5 bits (68), Expect = 0.14
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 323 TTHRYSKNS-FKLHRLPIPRPGEVL--GLVGQNGIGKSTALKILAGKQKPNLGRYTDPP 490
T YSK + R + RPG L G+VG IGKST +IL K NLG + P
Sbjct: 22 TRRYYSKQKDISIVRQRLGRPGNHLKIGIVGMPNIGKSTLFQILT---KTNLGNPANYP 77
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 320 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGQNGIGKSTALKILAGKQKPNLGR 475
H + +Y ++ SF L+ + I P E +G+VG+ G GKST L +P G+
Sbjct: 1230 HYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGK 1283
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQ 457
G GL G+NGIGKST L+ L+ ++
Sbjct: 208 GRRYGLTGRNGIGKSTLLRALSRRE 232
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKPNLG 472
+ LVG NG GK+T +K++ K +P+ G
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTG 649
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILA 448
PG++ L+G++G GK+T L +LA
Sbjct: 910 PGKLTALMGESGAGKTTLLNVLA 932
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 341 KNSFKLHRLPIPRP-GEVLGLVGQNGIGKSTALKILAGKQKPNLGR-YTDPPDWQEI 505
+N F L + + P GE++ ++G +G GKST + +L P G Y D +EI
Sbjct: 447 ENLFSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEI 503
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKP---NLGRYT 481
+ +VG+NG GKST L ++ G P N+ RY+
Sbjct: 419 VAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYS 451
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGK 454
G+ GL+G NG GKST L+ +A +
Sbjct: 101 GQRYGLLGDNGSGKSTFLESVAAR 124
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 338 SKNSFKLHRLPIPRPGEVLGLV-GQNGIGKSTALKILAGKQKPNLGRYTDP 487
S F L L I P L +V G G GKS+ + L G+ N G Y P
Sbjct: 625 SPGDFCLRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGSYNLP 675
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 386 EVLGLVGQNGIGKSTALKILAG 451
E L LVG+ G GK+T +++LAG
Sbjct: 468 EPLLLVGETGTGKTTTIQLLAG 489
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 320 HTTHRYSKN-SFKLHRLPIP-RPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
H + RY +N L+ + + +P E +G+VG+ G GKST L +P G
Sbjct: 1228 HYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSG 1280
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 371 IPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
+ R GE+ +VG+ G+GKS+ L+ G + + G
Sbjct: 605 VARRGELCCIVGKVGMGKSSLLEACLGNMQKHSG 638
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 166 LLYVWEN-SASKSLLMTR*PPSLRSYVSVVVLCEEMSL*CYHHHQYPI*LGETHYPPLLQ 342
LLY+ E+ S +KS L+ L+S + V L + SL CY H++P E Y P L
Sbjct: 726 LLYMLEDVSRNKSQLLAE-KKHLKSQLMVANL-DTYSLDCYEIHEFPS-EWENDYAPFLL 782
Query: 343 K 345
K
Sbjct: 783 K 783
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 185 FSHTYNRTTLLTFLPTSLWLAAISIHNSDTS*LVGF 78
F Y R ++ +LP ++W+ IS+H S L+ F
Sbjct: 129 FLLAYLRISIDRYLPIAIWIGLISLHPKLRSYLIQF 164
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKIL 445
+PG+ + VG +G GKST + ++
Sbjct: 1145 KPGQFVAFVGSSGCGKSTTIGLI 1167
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 341 KNSFKLHRLPIPRP-GEVLGLVGQNGIGKSTALKILAGKQK 460
KN++ + P P G+ LG++G GIGK+ A + A K
Sbjct: 141 KNNWNANCKPSHDPEGKTLGILGLGGIGKTMAKRARAFDMK 181
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 365 LPIPRPGEVLGLVGQNGIGKSTALKILAGKQK 460
LP + GLVG +GKS+ + L G +K
Sbjct: 295 LPDGKTKMTFGLVGYPNVGKSSTINALVGSKK 326
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAG 451
R GE L G NG GK+T L + G
Sbjct: 288 REGERWALTGSNGSGKTTLLAYVVG 312
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 260 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTAL 436
+ K D TI IP+N H H++ +S ++ ++ + R V G +G S A+
Sbjct: 269 IAKAKIDT-TIAVIPANAFHHLVHKFPNSSAQIVQVILTRFQRVTFSTGYEYLGLSDAI 326
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 273 PLMLSPSSISHLTWRNTLPTVTPKTHSSSI 362
PL L PSS+ R T +TPK ++S+I
Sbjct: 142 PLKLIPSSLCGRLLRTTEVLITPKPNTSAI 171
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 371 IPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYTDPPD 493
+P PG+ L+ Q G + K KP GR D D
Sbjct: 1743 VPNPGDRSALLQQIHTGTRLKKTVTTDKSKPIAGRVLDASD 1783
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKIL 445
G+ +G++G IGKS A KIL
Sbjct: 159 GKRVGIIGMGAIGKSFAQKIL 179
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILA 448
+ L+G NG+GKST L +A
Sbjct: 345 ISLIGVNGVGKSTTLAKIA 363
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 458 KPNLGRYTDPP--DWQEILLISGALSCKITSQRSSKMI*RRSLS 583
KP R PP DWQ +S +S I+S RSS +++S
Sbjct: 671 KPPSYRLIRPPLRDWQSSDTLSSEMSKSISSSRSSPFSLEQTIS 714
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 277 KGTFLHTKPQPIHSSSEMVAILS 209
KG+ + PQ I +SSE+V +LS
Sbjct: 96 KGSVIQFHPQEIFASSELVKLLS 118
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 577 IKPQYVDQIPKAVKGTVGQLLDKKDEMKNQSV 672
+KP+ +D++PK + + L+ K+ +N+ V
Sbjct: 172 VKPKNLDKVPKLAENEGNKSLESKESNENKVV 203
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.1
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +2
Query: 398 LVGQNGIGKSTALKIL----AGKQKPNL--GRYTDPPD--WQEILLISGALSCKITSQRS 553
+VGQNG GK+T ++ L G PN G + P ++ +L L+ + T+Q
Sbjct: 32 IVGQNGSGKTTIIECLKYATTGILPPNTKGGAFIHDPKICGEKEVLAQVKLAFRNTNQ-- 89
Query: 554 SKMI*RRSLSLNM 592
KMI RSL L++
Sbjct: 90 VKMICTRSLQLSV 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,843
Number of Sequences: 5004
Number of extensions: 72569
Number of successful extensions: 271
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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