Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30113
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   1.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 135 RCRQECKKSCPVVRMGKLCIEV 200
           RC   C++ CP V    LCI++
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKI 66


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 135 RCRQECKKSCPVVRMGKLCIEV 200
           RC   C++ CP V    LCI++
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKI 66


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 275 FDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKI 442
           F+A  + NI  +  K + ++      + H LPI   G  L    Q G GK+ A  +
Sbjct: 198 FEAAGLRNIVLDNIKKSGYK-KPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 KIATISEELCIGCG 254
           K+ TI +  C+ CG
Sbjct: 534 KVETIGDAYCVACG 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,685
Number of Sequences: 438
Number of extensions: 4873
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)