Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30111
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.6  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.8  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 639 YIVTEFYYVKHSSEMYIYILIDGRILIYLLYLDVYFNSI*SRXKTA 502
           YIV  F  V+  S  Y++ L+    LI LLY D++      R K A
Sbjct: 801 YIVQRFL-VQQDSNRYLHPLLSVMDLINLLYTDIFSTISSPRAKAA 845


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 7   LAAPRRTLGERTLPKTHSSTLESTIIKAGNVTFGQLLVNQKIELLTLYSIGSHKT 171
           + + +RT  +  +  TH  +   + +  G VTF  L    K E+ ++ + GS ++
Sbjct: 28  IPSAKRTAVQFCIGPTHEQSPRMSTVSQGRVTFAVLPTKPKDEVTSMKANGSRQS 82


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 101 VTLPALIIVDSSVELCVLGRVLS-PRVL 21
           V++P  I++  S  LC+L  VLS  RVL
Sbjct: 855 VSVPKTIVITVSASLCILRNVLSLQRVL 882


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,947
Number of Sequences: 5004
Number of extensions: 47468
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)