Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30111
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 266 EYNRSFKEYGSKPALNKG*YLTCYLSKMSFRRVL*LPMEY--KVNNSIF 126
           +Y+   K++GS+P       LTC   KM FRRV+   +EY  K +N+ F
Sbjct: 54  KYSDIIKDFGSQPKQ----VLTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


>Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical
           protein R06B9.1 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 316 CAFGQKNVIDMSIQIDLNIIVPSKNTVQNLH*IKVNT*PVIYLRCRSEEFCD-CQWNTKS 140
           C F +K  +++ + I     VP +    N+H +  ++ PV  ++ +  + C    +   +
Sbjct: 178 CCFFRKGYLELRVNIPKTGFVPGETVPMNIHILNHSSVPVTEVKAKIIQQCKFIAYRNGT 237

Query: 139 IIRF 128
           I RF
Sbjct: 238 IFRF 241


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical protein
            C34F6.9 protein.
          Length = 1181

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -3

Query: 298  NVIDMSIQIDLNIIVPSKNTVQNLH*IKVNT*PVIYLRCRSEEFCDCQWNTKSIIRFSDL 119
            N  D +I + +++   +K T+Q++     N  PV+ + C+S   C  Q    S  RF+ L
Sbjct: 996  NAPDKAIYVSIDLSSKTKGTMQSMVDKMANPIPVVGMNCKS---CG-QETLCSTTRFTKL 1051

Query: 118  PIIV 107
            P ++
Sbjct: 1052 PEVL 1055


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,332
Number of Sequences: 27780
Number of extensions: 257962
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)