Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30111
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27340.1 68417.m03923 Met-10+ like family protein  ; contains...    29   2.2  
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain...    29   3.9  

>At4g27340.1 68417.m03923 Met-10+ like family protein  ; contains
           Pfam profile PF02475: Met-10+ like-protein
          Length = 619

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 313 HRLPPLIIDDSLSFYVKLTQYYWN 384
           H L  L++++ L F+V L + YWN
Sbjct: 404 HSLVTLVVENGLRFHVDLARVYWN 427


>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 595

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 214 PLFNAGFEPYS-LKERLYSNQSVLTYQ*HFFVQMHRLPPLIIDDSLSFYVKLTQ 372
           P F+   + +  LKE LY++   L     +F+++H       D+SLS YV L++
Sbjct: 135 PKFSWSLKKFKELKEELYNSDKFLVGGRQWFLKVHPKGVKARDNSLSIYVYLSE 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,925
Number of Sequences: 28952
Number of extensions: 221815
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)