Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30110
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 73 3e-14
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 31 0.16
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 31 0.20
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 30 0.36
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.1
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 1.4
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 3.3
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 3.3
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.8
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 7.7
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/89 (37%), Positives = 53/89 (59%)
Frame = +2
Query: 254 AIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGR 433
A+ +RG +Y+ + +A HFQ+ L+L+PD A +K+ + L+ K +GN+ F+ G
Sbjct: 179 ALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGN 238
Query: 434 WQQALALYNEALTIDKNNRTVNAKLTSTR 520
+Q A Y+EAL ID +N+ AKL R
Sbjct: 239 YQDAYEKYSEALQIDPDNKETVAKLYMNR 267
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 594 NYVKALLRRAKCYTELGEYEEAVKDYE 674
+Y+K L RAK + L ++EEAV+D +
Sbjct: 293 SYLKGLKVRAKAHEALEKWEEAVRDVQ 319
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +2
Query: 257 IYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRW 436
+Y++ F++ ++A K VLRLNP + +A+ R K++ G A + +
Sbjct: 146 MYLKAQVYIFQNDMDRAQKIAHDVLRLNPKNVEAL--VLRGKVMYY---SGENAKAITHF 200
Query: 437 QQALALYNEALTIDKNNRTVNAKLTSTR 520
Q+AL L + T + V KL +T+
Sbjct: 201 QEALKLDPDCTTAKTLFKQVR-KLENTK 227
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 594 NYVKALLRRAKCYTELGEYEEAVKD 668
+YVKAL RR+ Y +LG+ +EA+ D
Sbjct: 216 SYVKALNRRSAAYEQLGKLDEALMD 240
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 353 KAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEALT 472
K++ +RAKL + K GN+A+ + A+ Y +A+T
Sbjct: 140 KSMTKEERAKLAAELKTLGNKAYGQKEYANAIDYYTQAIT 179
Score = 27.1 bits (57), Expect = 2.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 618 RAKCYTELGEYEEAVKD 668
RA CY +G++E+ +KD
Sbjct: 190 RAACYAAIGDFEQVIKD 206
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 114 MDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQD 248
+D +D++P+ + +TKA G Q A EI + +LD QD
Sbjct: 403 VDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQD 447
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.9 bits (64), Expect = 0.36
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 248 YRAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVE----TYKRAKLLKQKKEEGNE 415
Y A Y G+ R++QA HFQ+ +NP++ + Y+R K K+ + +
Sbjct: 499 YNAWYGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDR 558
Query: 416 AFKMGRWQQALALYNEA 466
A K+ + +LA + +A
Sbjct: 559 ACKLDE-KSSLARFKKA 574
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +2
Query: 293 RDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEALT 472
+D A K + +N +HK+ V T K L +Q + N+A + L NE+L
Sbjct: 45 KDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLK 104
Query: 473 IDKNNRTVNAKLTSTRPPSVRXEHAQ*NRRS 565
+ N+ +T S+R +++ +S
Sbjct: 105 TNLENQNKRFDALTTENQSLRRANSELQEQS 135
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 428 GRWQQALALYNEALTIDKNNRTVNAK-LTSTRPPSVRXEHAQ*NRRSVHRCPRTRRK 595
G+ QQA+ ++ +A + ++NN V K + +++PP+V N +V T K
Sbjct: 448 GQTQQAVEVHTDANSPEENNTPVTKKEVETSKPPAVSGSTPPVNEAAVIESSNTLEK 504
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 302 QAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFK 424
Q F HF+Q + KK++ ++ K +KQKK+E E +K
Sbjct: 283 QMFHHFEQ----KREEKKSMPKEQK-KAIKQKKDEEEEKYK 318
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 81 DANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTE 254
+ DY + C L SP+ A A LG Q + N LL+LDS + E
Sbjct: 88 ETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDNWNRLLQLDSSNLE 145
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 138 GCSLGNGPYRTLHVDNH*HQGHAGHLHVTV*VFPMPAIH 22
G L N T H+D GH GH+ V P+PA H
Sbjct: 55 GPYLKNSVCATCHLDERYCPGHFGHI-----VLPIPAYH 88
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 153 IWCKRGCSLGNGPYRTLHVDNH*HQGHA 70
IW + GCS+ + Y +++ NH H A
Sbjct: 429 IWYRLGCSILSMTYISIYQKNHVHDSPA 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,281
Number of Sequences: 5004
Number of extensions: 45705
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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