Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30110
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 82 4e-16
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 51 1e-06
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 34 0.12
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 33 0.22
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 32 0.38
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 32 0.50
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 31 0.66
SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13) 31 1.1
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 31 1.1
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0) 30 1.5
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 30 2.0
SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06) 30 2.0
SB_43878| Best HMM Match : TPR_1 (HMM E-Value=1.9) 29 3.5
SB_29174| Best HMM Match : TPR_1 (HMM E-Value=0.55) 29 3.5
SB_23911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 29 4.6
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +2
Query: 290 DRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEAL 469
D ++A++HF QV++ +PDHKKA ++AK L+ KK+EGN+AF G +Q+A LY EAL
Sbjct: 1 DNVDKAYQHFIQVMKKDPDHKKARMILRKAKSLQAKKQEGNDAFTGGHYQKAYELYTEAL 60
Query: 470 TIDKNNRTVNAKLTSTR 520
ID N++ NAKL R
Sbjct: 61 EIDPKNKSTNAKLYYNR 77
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 597 YVKALLRRAKCYTELGEYEEAVKDYERL 680
Y KA L+RA CY E +YEEAV+DYE L
Sbjct: 104 YTKAYLKRANCYMESEKYEEAVRDYESL 131
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 82.2 bits (194), Expect = 4e-16
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +2
Query: 290 DRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEAL 469
D ++A++HF QV++ +PDHKKA ++AK L+ KK+EGN+AF G +Q+A LY EAL
Sbjct: 1 DNVDKAYQHFIQVMKKDPDHKKARMILRKAKSLQAKKQEGNDAFTGGHYQKAYELYTEAL 60
Query: 470 TIDKNNRTVNAKLTSTR 520
ID N++ NAKL R
Sbjct: 61 EIDPKNKSTNAKLYYNR 77
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 597 YVKALLRRAKCYTELGEYEEAVKDYERL 680
Y KA L+RA CY E +YEEAV+DYE L
Sbjct: 104 YTKAYLKRANCYMESEKYEEAVRDYESL 131
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3
Query: 24 ELRALETLKRLHEDAQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQE 203
++++ + ++ A A D DYR+VVFCM LD P+ T K+ KAE LAL+ + +
Sbjct: 141 DMKSAKMVQDFESSALEAYDKKDYRKVVFCMRNILDVCPAATFFKVMKAEALALMEKYSD 200
Query: 204 AQ 209
A+
Sbjct: 201 AE 202
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 290 DRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEAL 469
D + ++ + + + + P++ E K KL + KK EGN + + + A+ALY++A+
Sbjct: 3 DTEMKSGEEKPEAMEIEPENSPEEEQDK-VKLAEAKKAEGNREYGLKNYVSAIALYSKAI 61
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 353 KAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEALTIDKNN 487
+A E +R + Q KE+GN AFK ++++A+ LY +AL D+ N
Sbjct: 109 RASERKQREAVALQLKEKGNLAFKQQKYEEAVKLYTQALNQDRTN 153
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +3
Query: 114 MDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTELYTSGDYVCILKT 293
M C S SCT T + C + C ++A + + DSQ EL +S D+V ++
Sbjct: 119 MPVCQQCSSSCTG-NYTNSTCSGMT--CPSNYKLATIVTKPDSQFAELISSADFVNVVTN 175
Query: 294 ETNKRLNT--FNKYC--VSIQIIRKLWKPTREL 380
T KR T F+ + V+ Q R+L P L
Sbjct: 176 VTCKRNETTGFSSWSPDVTRQFCRRLNDPPTNL 208
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +2
Query: 287 EDRDEQAFKHFQQVLRLNPDHKKAVETYKR-AK-------LLKQKKEEGNEAFKMGRWQQ 442
E++++Q K ++ R+N K K AK L ++K++GN+AF+ G +++
Sbjct: 174 EEKEKQQVKEKKEKARINTREAKLPTNVKTPAKTDQELTFLANREKDKGNDAFRSGDYKE 233
Query: 443 ALALYNEALTIDKNNRTVNAKLTSTR 520
+L Y ++ + + N + + R
Sbjct: 234 SLVYYTRSIELKPTAASYNNRAMAVR 259
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 383 LLKQKKEEGNEAFKMGRWQQALALYNEALTI 475
L + K+EG +K+GR+ +A+ Y++A+ +
Sbjct: 414 LAVRAKDEGMRLYKIGRYAEAVEKYSQAIDV 444
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 147 TKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTELYTSGDYVCILKTETNK-RLNTFN 323
T + +AEC L G+ +A ++ ND++RL + + Y + VC L + +N+ L+ +N
Sbjct: 366 TDALVHRAECYELQGKSAQALDVYNDVVRLRPKSSRSYCA-RAVCYLNSGSNEAALSDYN 424
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 344 DHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEALTIDKNNRTV 496
D K T + L +K + +A G +Q+A+ LY+EA+ +D NN +
Sbjct: 8 DESKVDLTEQSRPGLHEKAKWAGDACSKGDFQKAVELYSEAIKLDPNNHVL 58
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 603 KALLRRAKCYTELGEYEEAVKDYER 677
+A +R +CY LG+ EA++DYE+
Sbjct: 840 RAYGKRGECYHLLGDSNEAIRDYEK 864
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 287 EDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKE 403
+ RDE+A ++++ +RLNP + A+ LLK+K E
Sbjct: 442 QQRDEEALAYYREAVRLNPTYSDALNNL--GNLLKEKGE 478
>SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)
Length = 402
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 255 LYTSGDYVCILKTETNKRLNT 317
L G Y C+LKTE+N+ LNT
Sbjct: 89 LADGGRYTCVLKTESNRTLNT 109
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 398 KEEGNEAFKMGRWQQALALYNEALTIDKNN 487
KEEGN+ FK G ++ AL+ Y AL + N
Sbjct: 13 KEEGNKYFKAGDYEAALSSYAAALKLYSGN 42
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 371 KRAKLLKQKKEEGNEAFKMGRWQQALALYNEALTIDKNN 487
++AK K K ++GN A G Q+A+ Y EA+ +D N
Sbjct: 5 EKAKAAKLK-DQGNAALSAGDTQKAIEFYTEAILLDPAN 42
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +2
Query: 287 EDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEA 466
E R K Q++ +L + ++ Y ++KE+GNE FK G + A Y EA
Sbjct: 334 EKRTPDVLKKVQELEKLMKEEERLA--YIDPVKSAEEKEKGNEYFKKGDFPSAQKHYTEA 391
Query: 467 LTIDKNNRTVNAKLTSTR 520
+ K N +AKL S R
Sbjct: 392 I---KRN-PEDAKLYSNR 405
>SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 845
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +2
Query: 266 RGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQA 445
RG Y D E+A +H+++ LRL ++K + ++ K GN G++++A
Sbjct: 197 RGRKYYDMDNYEEAIEHYKEALRL---YQKTSDDQRQG---KAHLLIGNAHNLQGKYEEA 250
Query: 446 LALYNEALTI 475
+ Y EAL +
Sbjct: 251 IGHYKEALRL 260
>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 503
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 302 QAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEE------GNEAFKMGRWQQALALYNE 463
+ F+ V + D +KA++ + + LK+ ++ + + + G ++QALA YN+
Sbjct: 6 EPFQVLGMVYEMQNDSEKALQFFLISAYLKKSEDSEDWLKLASMSLEQGNYKQALACYNQ 65
Query: 464 ALTIDKNNRTV 496
AL + ++ T+
Sbjct: 66 ALKHNPDDPTI 76
>SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06)
Length = 118
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 344 DHKKAVETYKRAKLLKQKKEEGNEAFKMGRWQQALALYNEAL 469
DH K + + KEEGN FK +++A+ Y+ A+
Sbjct: 18 DHNKELNVEDKIDQAFSLKEEGNGCFKQKNYREAMKKYHRAM 59
>SB_43878| Best HMM Match : TPR_1 (HMM E-Value=1.9)
Length = 87
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 302 QAFKHFQQVLRLNPDHKKAVETYKRA 379
+ ++FQQ L+ ++KKA++TYK+A
Sbjct: 47 ETLEYFQQALQELENYKKAIKTYKQA 72
>SB_29174| Best HMM Match : TPR_1 (HMM E-Value=0.55)
Length = 420
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 302 QAFKHFQQVLRLNPDHKKAVETYKRA 379
+ ++FQQ L+ ++KKA++TYK+A
Sbjct: 171 ETLEYFQQALQELENYKKAIKTYKQA 196
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 302 QAFKHFQQVLRLNPDHKKAVETYKRA 379
+ ++FQQ L+ ++KKA++TYK+A
Sbjct: 286 ETLEYFQQALQELENYKKAIKTYKQA 311
>SB_23911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 600 VKALLRRAKCYTELGEYEEAVKDYER 677
+KAL RRA+ Y EL E +++ +D E+
Sbjct: 153 IKALYRRAQAYLELDEIDKSREDIEK 178
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 398 KEEGNEAFKMGRWQQALALYNEALTIDKNNRTVNAKLTSTR 520
KEEGN +K +++A+ Y E + + + VNA L + R
Sbjct: 88 KEEGNYEYKRKNFKKAIDAYTEGIKLRCQDGHVNAILYTNR 128
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 398 KEEGNEAFKMGRWQQALALYNEALTIDKNNRTVNA 502
K GNEAF ++ A+ +YNEAL + N+ + A
Sbjct: 338 KTIGNEAFCKQQFLTAVNMYNEALNLAPNSAVLYA 372
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 597 YVKALLRRAKCYTELGEYEEAVKDYE 674
Y+K RRA LG+++ ++KDYE
Sbjct: 254 YIKGYYRRATANMALGKFKLSLKDYE 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,723
Number of Sequences: 59808
Number of extensions: 371748
Number of successful extensions: 1158
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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