Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30110
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.89 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 37  WKHSNGYMKMPSVPLMLMIIDV 102
           W  SNG +K+PS  ++ MI  V
Sbjct: 813 WYSSNGDIKVPSTKVLAMISSV 834


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 207 QEIANDLLRLDSQDTELYTSGDYVCILKTETNKRLNTFNKY 329
           +E A   + ++ Q   +    DY+  L  +TN+R   F++Y
Sbjct: 244 EEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 207 QEIANDLLRLDSQDTELYTSGDYVCILKTETNKRLNTFNKY 329
           +E A   + ++ Q   +    DY+  L  +TN+R   F++Y
Sbjct: 334 EEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 276 VCILKTETNK 305
           VC+LKT+TN+
Sbjct: 607 VCVLKTDTNQ 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,376
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)