Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30107
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 130 2e-31
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 117 2e-27
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 51 2e-07
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 3.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 4.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 4.0
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 5.2
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 9.2
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 9.2
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 130 bits (314), Expect = 2e-31
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAG 435
+LI+K+ IPVVMAGIIAIYGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAG
Sbjct: 49 DLIVKNTIPVVMAGIIAIYGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAG 106
Query: 436 FAIGIVGDAGVRGTAQQPRLFVGMILFL 519
FAIGIVGDAGVRGTAQQPRLFV MIL L
Sbjct: 107 FAIGIVGDAGVRGTAQQPRLFVAMILIL 134
Score = 60.5 bits (140), Expect = 3e-10
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2
Query: 131 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+A
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISA 42
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIFAEVLGLYGLIVA+ L
Sbjct: 132 LILIFAEVLGLYGLIVALLL 151
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 117 bits (282), Expect = 2e-27
Identities = 53/88 (60%), Positives = 71/88 (80%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAG 435
E++MKS+IPVVM+GII +YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG
Sbjct: 49 EIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAG 108
Query: 436 FAIGIVGDAGVRGTAQQPRLFVGMILFL 519
+AIG+VGD GV+ +Q R+FV M+L L
Sbjct: 109 YAIGVVGDRGVQSFMRQDRIFVSMVLIL 136
Score = 49.6 bits (113), Expect = 5e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 131 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
PIY FFG G ++++FS LGA YGTA +G GIAA
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAA 42
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIFAEVLGLYGLIV + L
Sbjct: 134 LILIFAEVLGLYGLIVGLIL 153
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +1
Query: 268 KSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLA 429
K++I ++ ++AIY L++A++ + + + PA + Y GF G+ VG L
Sbjct: 85 KNLISIIFCEVVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLI 144
Query: 430 AGFAIGIVGDAGVRGTAQQPRLFVGMIL 513
G +GI G + AQ LFV +++
Sbjct: 145 CGVCVGITGSSAALADAQDASLFVKVLV 172
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 149 FGVMGAASAIIFSALGAAYGTAKSGTGI 232
+G++G AS + F +GAA+G GT I
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSI 72
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
++ IF VLGL+GLIV + +
Sbjct: 172 VVEIFGSVLGLFGLIVGLLI 191
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 31.1 bits (67), Expect = 0.18
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 274 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 453
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246
Query: 454 GDAGVRGT 477
GD V T
Sbjct: 247 GDVCVSNT 254
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 479 AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 378
+VP P++P MP P+A P A AP NP
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 479 AVPRTPAS--PTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*M 306
A P P S P++PM PAA P P+A AP PL AG AP + A P
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPP 478
Query: 305 AIIPA 291
A PA
Sbjct: 479 APAPA 483
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 660 GMVVAGSGSNLHRVSEHPSHSCILHLFPCSFFTYPRPV 773
G V G G+++H++ SHS LH FP S Y PV
Sbjct: 235 GHVALGGGTDMHKLGVFGSHS--LHSFP-SALEYVVPV 269
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 3.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 698 GFGAPFPLLYITFVSLLVFH 757
GFG+P P Y+ + +L+ H
Sbjct: 372 GFGSPIPYFYVAYFGVLLVH 391
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 89 TGPKNCDDYLHTLTPRNYFCTDK 21
TG KNCDD+L +P + D+
Sbjct: 402 TGNKNCDDHLRDKSPERRYRYDR 424
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 496 FVGMILFLFSLKYWVFTDLSSPSTCT 573
F G+ +F+FS+ YW F +SS S T
Sbjct: 564 FCGIYVFIFSVFYWFF-KISSSSLAT 588
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 387 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 274
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 744 RETNVIYKSGKGAPKPYASWT-RYRRRPSLCASSDSDNEHRGSEHGR 607
+ NVI ++ + KP + T R+RR ++ + SD D + +H +
Sbjct: 164 KPVNVIVRNRASSRKPPLTSTHRFRRYGAVISDSDDDESNTEQDHSK 210
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFLFSLKYWVFTDLSSPS 564
G A+G G+ G R +++P + + + Y+ F DLS P+
Sbjct: 520 GSAVGQNGNVGPRQISEEPMSIIFNLGISNNWAYYYFRDLSFPA 563
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 89 TGPKNCDDYLHTL 51
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 704 GAPFPLLYITFVSLLVFHIS 763
GA P+ Y+TFVSL V+ ++
Sbjct: 1542 GANKPIAYLTFVSLFVYIVT 1561
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -1
Query: 479 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 390
+VP+ PA+P +P A +P A P P AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,466
Number of Sequences: 5004
Number of extensions: 77907
Number of successful extensions: 262
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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