Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30107
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 34 0.15
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 1.4
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 30 1.8
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.8
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 30 2.4
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4) 30 2.4
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 3.2
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 3.2
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 29 4.2
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 4.2
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 5.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 7.3
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 7.3
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 7.3
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26) 28 9.7
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 28 9.7
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 140 bits (339), Expect = 1e-33
Identities = 72/88 (81%), Positives = 78/88 (88%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAG 435
ELIMKSIIPVVMAGIIAIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAG
Sbjct: 49 ELIMKSIIPVVMAGIIAIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAG 106
Query: 436 FAIGIVGDAGVRGTAQQPRLFVGMILFL 519
FAIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 107 FAIGIVGDAGVRGTAQQPRLFVGMILIL 134
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +2
Query: 125 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAA
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAA 42
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIFAEVLGLYGLIVA+ L
Sbjct: 132 LILIFAEVLGLYGLIVALIL 151
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -2
Query: 553 ISP*RPNTSAKIRIRSFRRIT*AAEQYHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLC 374
+ P R TS K+ + + +R + YHA+ + +C ++P +L Q S C
Sbjct: 239 VLPTRQRTSGKV-LPTRKRTRRLSVTYHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKC 297
Query: 373 KGGSWLAPGGHQQSGQ--PRPDRRW 305
PGGHQ Q R RW
Sbjct: 298 YYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 394 GAGLAVGFSGLAAGFAIGIVG 456
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 276 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 383
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 512 KIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 393
KI+P N + PR P + T P P P PT P P
Sbjct: 206 KILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 441 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 310
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 441 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 310
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -1
Query: 620 RSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKIIPTNNLGC*AVPRTPASPTMPM 441
R G G G R ++ D + + T F + + N C V TP PT
Sbjct: 1376 RVYGVGVGRAFSRAQLRRISTDRRHMFTVGFKALRRLVGVMKNRLCREVRPTPTKPTKRP 1435
Query: 440 AKPAARPENPTAKPAP 393
+P RP PT KPAP
Sbjct: 1436 TRP-TRPPKPT-KPAP 1449
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 467 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 375
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = -1
Query: 500 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRT 327
+NN G A P TPA+ +P+A P+ A P T PAP + P A + ++
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPPPPYRTTAKPFPKMSLTP 278
Query: 326 ATTRP*MAIIPAMTTGMIDFMISSAS 249
+P + P +T ++ ++ S S
Sbjct: 279 TPKKPPVPKKPVLTPAQLEGLLKSPS 304
>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
Length = 964
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 747 SRETNVIYKSGKGAPKPYASWTRYRRRPSLCASSDSDNEHRGSEHGRR 604
S E +++G+ A KP W R R R + DNE +E G R
Sbjct: 393 SYEEKHTHENGEDADKPKGKWHRNRSRNKHKQHREDDNEEEETELGLR 440
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 460 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 326
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 464 PASPTMPMAKPAARPENPTAKPAPK 390
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 464 PASPTMPMAKPAARPENPTAKPA 396
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 276 HSCRHGGYYCHLRSGRGCPDCW 341
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 464 PASPTMPMAKPAARPENPTAKPAPK 390
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 464 PASPTMPMAKPAARPENPTAKPA 396
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 210 LPSQELVLPPCR**G*ADHEVDHSCRHGGYYCHLRSGRGCPDCWCPPG 353
LPS LP C G + + C YCH ++GR C C PG
Sbjct: 250 LPSHGFPLPMCSP-GNHGIQCNSKCTCASVYCHAQTGR----CMCSPG 292
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 503 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 393
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 129 IQSTDPSLELWGRRLLSSSAPWELPMEL 212
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 476 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 378
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 467 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 375
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 467 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 375
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 467 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 375
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
Length = 490
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 229 YCRHVGDEAELIMKSIIPVVMAGIIAIYGLVVAVLI 336
+C H G+ + + S++P V+ G ++ LV VLI
Sbjct: 379 WCGHKGEILDFTLSSLVPGVLTG-FPVFSLVPGVLI 413
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 336 NQDSHDQTVDGNNTRHDDRNDRLHDQLSL 250
N D+ D D NN DD ND +D + +
Sbjct: 140 NDDNDDNNNDSNNNSDDDGNDDTNDYIDV 168
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 606 REWCVF---RAFILCTGRWRR*VRKDP 535
R WCV+ R+ I CT RW R V P
Sbjct: 931 RGWCVYHMGRSLIACTRRWMRKVACSP 957
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 638 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENK 516
+ ++ +STGD S VC G +F D K + Q E K
Sbjct: 15 LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVK 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,751,696
Number of Sequences: 59808
Number of extensions: 657362
Number of successful extensions: 2252
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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