Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30107
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 128 6e-30
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 128 6e-30
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 128 6e-30
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 128 6e-30
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 112 2e-25
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 112 2e-25
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 49 3e-06
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.17
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.40
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.40
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.70
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.9
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.9
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 4.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 6.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 6.5
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 8.6
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 8.6
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 8.6
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 8.6
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 8.6
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 8.6
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 8.6
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 8.6
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 128 bits (308), Expect = 6e-30
Identities = 64/89 (71%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
ELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL A
Sbjct: 53 ELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGA 112
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILIL 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 137 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
Y PFFG MGAASA IF+ LGAAYGTAKS GI +
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICS 46
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIF+EVLGLYG+IVA+ L
Sbjct: 139 LILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 128 bits (308), Expect = 6e-30
Identities = 64/89 (71%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
ELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL A
Sbjct: 53 ELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGA 112
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILIL 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 137 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
Y PFFG MGAASA IF+ LGAAYGTAKS GI +
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICS 46
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIF+EVLGLYG+IVA+ L
Sbjct: 139 LILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 128 bits (308), Expect = 6e-30
Identities = 64/89 (71%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
ELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL A
Sbjct: 53 ELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGA 112
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILIL 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 137 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
Y PFFG MGAASA IF+ LGAAYGTAKS GI +
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICS 46
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIF+EVLGLYG+IVA+ L
Sbjct: 139 LILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 128 bits (308), Expect = 6e-30
Identities = 64/89 (71%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
ELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL A
Sbjct: 53 ELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGA 112
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 113 GYAIGIVGDAGVRGTAQQPRLFVGMILIL 141
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 137 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
Y PFFG MGAASA IF+ LGAAYGTAKS GI +
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICS 46
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIF+EVLGLYG+IVA+ L
Sbjct: 139 LILIFSEVLGLYGMIVALIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 112 bits (270), Expect = 2e-25
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G GL A
Sbjct: 61 DLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGA 120
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGI GDAGVR +QQPR+FVGMIL L
Sbjct: 121 GYAIGIAGDAGVRALSQQPRMFVGMILIL 149
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 134 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIAS 54
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIFAEVLGLYG+IVA+ L
Sbjct: 147 LILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 112 bits (270), Expect = 2e-25
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAA 432
+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G GL A
Sbjct: 61 DLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGA 120
Query: 433 GFAIGIVGDAGVRGTAQQPRLFVGMILFL 519
G+AIGI GDAGVR +QQPR+FVGMIL L
Sbjct: 121 GYAIGIAGDAGVRALSQQPRMFVGMILIL 149
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 134 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIAS 54
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3
Query: 510 LILIFAEVLGLYGLIVAIYL 569
LILIFAEVLGLYG+IVA+ L
Sbjct: 147 LILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Frame = +1
Query: 268 KSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKGFIHLGAGL 405
K+++ ++ +AI+G+++A + G L E + P L G++ G GL
Sbjct: 91 KNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGL 150
Query: 406 AVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 513
VG S L G A+GIVG A P LFV +++
Sbjct: 151 TVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILI 186
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Frame = +1
Query: 268 KSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKGFIHLGAGL 405
K+++ ++ +AI+G+++A + G L E + P L G++ G GL
Sbjct: 91 KNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGL 150
Query: 406 AVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 513
VG S L G A+GIVG A P LFV +++
Sbjct: 151 TVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILI 186
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 270 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 353
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 369 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 271
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 369 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 271
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 48 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 206
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 207 ELPSQE 224
++P +E
Sbjct: 343 KMPDRE 348
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 470 RTPASPTMPMAKPAARPENPTAKPAPK 390
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 470 RTPASPTMPMAKPAARPENPTAKPAPK 390
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 300 YCHLRSGRGCPDCWCPPGASQ 362
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 476 VPRTPASPTMPMAKPAARPENPTAKPAPK 390
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 282 CRHGGYYCHLRSGRGCPDCWCPPGASQ 362
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 300 YCHLRSGRGCPDCWCPPGASQ 362
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 300 YCHLRSGRGCPDCWCPPGASQ 362
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 473 PRTPASPTMPMAKPAARPENPTAKPAPK 390
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 473 PRTPASPTMPMAKPAARPENPTAKPAPK 390
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 303 CHLRSGR-GCPDCWCPPGASQLPP 371
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 473 PRTPASPTMPMAKPAARPENPTAKPAP 393
P P P P + AA PE+P P P
Sbjct: 187 PAGPPGPAGPAGEDAAAPESPPGPPGP 213
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 282 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 407
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 282 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 407
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 477 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 301
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 300 N 298
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 477 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 301
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 300 N 298
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 477 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 301
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 300 N 298
N
Sbjct: 669 N 669
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 473 PRTPASPTM--PMAKPAARPENPTAKPAPK 390
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 473 PRTPASPTM--PMAKPAARPENPTAKPAPK 390
PRTP +P + P +P A P A+P P+
Sbjct: 434 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 463
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 473 PRTPASPTM--PMAKPAARPENPTAKPAPK 390
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 473 PRTPASPTM--PMAKPAARPENPTAKPAPK 390
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,128,329
Number of Sequences: 27780
Number of extensions: 471130
Number of successful extensions: 1816
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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