Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30107
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   163   2e-42
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  163 bits (395), Expect = 2e-42
 Identities = 80/88 (90%), Positives = 83/88 (94%)
 Frame = +1

Query: 256 ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAG 435
           ELIMKSIIPVVMAGIIAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAG
Sbjct: 49  ELIMKSIIPVVMAGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAG 108

Query: 436 FAIGIVGDAGVRGTAQQPRLFVGMILFL 519
           FAIGIVGDAGVRGTAQQPRLFVGMIL L
Sbjct: 109 FAIGIVGDAGVRGTAQQPRLFVGMILIL 136



 Score = 77.0 bits (181), Expect = 2e-16
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = +2

Query: 122 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 238
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAA
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAA 42



 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 510 LILIFAEVLGLYGLIVAIYLY 572
           LILIFAEVLGLYGLIVAIYLY
Sbjct: 134 LILIFAEVLGLYGLIVAIYLY 154


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 235 RHVGDEAELIMKSIIPVVMAGIIA--IYGLVVAVLIAGALQEPANY 366
           R  G +A   + +++  +   I++  I GL++ VLI G++ E   +
Sbjct: 392 RTAGQQAAYQLLALVITLGIAIVSGLITGLIMRVLICGSISEEQKF 437


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 120 LKIIQSTDPSLELWGRRLLSSS 185
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 259 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 372
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 39  VSWSECVQIVITVFGTCKYSH 101
           +SW E +QI + V    +Y H
Sbjct: 694 LSWLERIQIALDVLEGIRYLH 714


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 39  VSWSECVQIVITVFGTCKYSH 101
           +SW E +QI + V    +Y H
Sbjct: 732 LSWLERIQIALDVLEGIRYLH 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,097
Number of Sequences: 438
Number of extensions: 5655
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)