Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30106
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4HLP7 Cluster: Probable integral membrane protein Cj14...    35   1.6  
UniRef50_UPI0000D55829 Cluster: PREDICTED: similar to myosin, he...    33   5.0  
UniRef50_A5DHK6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  

>UniRef50_Q4HLP7 Cluster: Probable integral membrane protein Cj1452;
           n=1; Campylobacter lari RM2100|Rep: Probable integral
           membrane protein Cj1452 - Campylobacter lari RM2100
          Length = 236

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = -2

Query: 518 LVSRLVVSEVGILF*ILRFISLYFVFGANFFRFHVCLVN*YFPKFSSCNHVNEFFSHSNT 339
           L+   V+  V     I+ F+S+   +G  ++ FH  L+          N+ ++F+ +S+ 
Sbjct: 129 LLISCVLFAVATFLLIIPFVSIVIYYGVFYYLFHKLLLLDVLSNVLDKNNFDDFYKNSSP 188

Query: 338 CFLKLHASRSLVMQT-SQISLFGPFGPSFFVIY 243
            + K+    +LV  T S I L G F   F+VI+
Sbjct: 189 LYFKI---ITLVFFTLSSIPLLGLFLQVFYVIF 218


>UniRef50_UPI0000D55829 Cluster: PREDICTED: similar to myosin, heavy
            polypeptide 9, non-muscle; n=1; Tribolium castaneum|Rep:
            PREDICTED: similar to myosin, heavy polypeptide 9,
            non-muscle - Tribolium castaneum
          Length = 884

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 62   LLLC*NRDIMMEFDDIVVKENPGLCRCCLSEGCYK----DLGSEYTWMNENEVYADMLLE 229
            L LC N+D     ++   K N G    C+ E C K    D GS+Y+ MN+ + Y + L +
Sbjct: 804  LCLCANKDKPATAEENDEK-NTGSKELCVPETCGKSVTCDFGSDYSLMNDLQTYVNYLYQ 862

Query: 230  CFDISISQKMRDRTVRID 283
              +I  + + R   +R D
Sbjct: 863  QLNIITNIETRIEDLRND 880


>UniRef50_A5DHK6 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 318

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = -1

Query: 345 KHLFLEVTCISESCDANLADQSIRTVRSLIFCDILIS 235
           K LF++V   S SC +NLAD S     S IF D LI+
Sbjct: 15  KSLFIQVMIFSFSCISNLADNSFVRYISTIFKDFLIN 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,115,908
Number of Sequences: 1657284
Number of extensions: 10644885
Number of successful extensions: 25748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25745
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)