Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30106
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   1.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   9.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   9.5  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   9.5  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 528 NQRYLLSPYRSKGNVADQRNNQ-MPSPRK 611
           N RY     + +  + DQ+NN  +PSPR+
Sbjct: 90  NHRYKTKRAQHEKGMHDQQNNNPLPSPRR 118


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 209 KLHFHSSKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQ 99
           K   ++ K   NLN  S  ++ S  +GR + S   RQ
Sbjct: 182 KAKINTGKTQYNLNSKSLPRQYSQSRGRHNQSRSKRQ 218


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 416 VCLVN*YFPKFSSCNH 369
           V L   YFP FS+C++
Sbjct: 269 VTLSTHYFPVFSACDY 284


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 133 KAGILLHHNIVKLHH 89
           KAG ++H +I  +HH
Sbjct: 81  KAGSMVHLHIYDMHH 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,768
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)