Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30106
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.84
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 28 1.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 1.9
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 26 4.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 4.5
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 4.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 22 6.1
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.8
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 7.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.8
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.84
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 238 IKAFQQHIRVNFIFIHPSVLR 176
IK+F H++ NF F H ++LR
Sbjct: 265 IKSFYGHVQANFFFFHETLLR 285
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 265 PNGPNRLICEVCITRLRDACNF 330
P+ + C C+ RLR CNF
Sbjct: 462 PDSTSHASCTYCVARLRSVCNF 483
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 191 SKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITI 63
S N + S + S+ PS + R TP+ HDS +TI
Sbjct: 294 SPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLTI 336
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 253 KNEGPNGPNRLICEVCITRLRDACNFKKQVFECEKNSLTWLQE 381
KN+GPNGP+ + + L N + E K+ + L+E
Sbjct: 327 KNDGPNGPSASAIDNDLKMLEQQLNVLGRHLEGRKSQVAKLEE 369
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 200 NEVYADMLLECFDISISQKMRDRTVRID 283
NE++ D LLE + I I ++ +RT+ D
Sbjct: 129 NEIFFDPLLERYSIVILDEVHERTLSTD 156
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 283 LICEVCITRLRDACNFKKQVFECEKNS 363
++ + +T+ RD + KQ F+C KNS
Sbjct: 583 VLVHMILTQFRDVFHLTKQRFDCLKNS 609
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 21.8 bits (44), Expect(2) = 6.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 423 SEEVGPEDEIQADESE 470
S++VG +DEIQ D E
Sbjct: 4056 SDDVGIDDEIQPDIQE 4071
Score = 21.8 bits (44), Expect(2) = 6.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 579 QRNNQMPSPRKRNRIRTTRKLNL*QKE 659
Q NN P P + + L L +KE
Sbjct: 4070 QENNSQPPPENEDHLDLPEDLKLDEKE 4096
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 579 QRNNQMPSPRKRNRIRTTRKLNL*QKEN 662
+RNN+ + + RN++R +K L +K N
Sbjct: 35 ERNNKQKNKKSRNQVRREKKKLLREKTN 62
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 233 SIPTAYPRKLHFHSSKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPS 90
S PTA P H++SS L T ++ S G+D+PSP + S
Sbjct: 235 STPTA-PDFPHYNSSPS----ELSPTQRRSSISNGKDAPSPVLKDLTS 277
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 537 YLLSPYRSKGNVADQRNNQMPSPRKRNRIRTTRKLNL*QKE 659
YL + RS N+ Q ++++ PRK ++ +KL + QK+
Sbjct: 9 YLCNDIRSFQNLLKQDDSKVKEPRKGFSEKSGQKLRINQKD 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,836
Number of Sequences: 5004
Number of extensions: 48353
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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