Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30106
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.90 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 128 RDSPSPQYRQTPSLYHDSNITITNKVPY 45
           +D  SP + Q+PS  H S   + +++PY
Sbjct: 624 QDGSSPHFHQSPSQNHSS--AVPDQMPY 649


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 RSKGNVADQRNNQMPSPRKRNRIR 626
           R+  N+ D RNN+  S   R R+R
Sbjct: 472 RAMENLGDGRNNKEDSEEFRQRLR 495


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 562 RETWPTKETTRCQAREKEIEYGRQE 636
           R  WPT+   R    E+  E+ RQE
Sbjct: 578 RALWPTEWKVRPSTVEEREEFRRQE 602


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 351 RKKFIDMVARGEFRKVLIY 407
           R++FIDMVAR     V IY
Sbjct: 94  REQFIDMVARCNKAGVRIY 112


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 567 NVADQRNNQMPSPRKRNRIRTTRKLN 644
           N+ +  NN + + +  N+I   R LN
Sbjct: 370 NIDEYNNNDLDTKKWNNKISALRALN 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,170
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)