Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30105
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    30   2.0  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  29   2.6  
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)                29   3.4  
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   28   7.9  

>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 131 STCRPPTSFSCCPSITTLRTPLDVATVAFV 42
           +T RPP   S CPSI  LR     +T+ FV
Sbjct: 104 ATLRPPLQHSSCPSIYYLRYSTPPSTIFFV 133


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = -1

Query: 567 LKVAANTAHPIVDNSGRQRLALPLALLMSMGDGNHSPSGGPYARLPTRK 421
           LK+  NT  P  D+SG   +  PLA   S  D  H P GGP A  PT +
Sbjct: 21  LKMNGNTIAP--DSSG---IFSPLASSTSASDSRHRPVGGP-AYSPTER 63


>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
          Length = 407

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 361 RMIRFFCYYSLIHRQSQRVAQTHQL*SV-CVRHNFLQDSHVSVKAEFVHSVIFDLQSMTS 185
           R+I++  YY   HR S  +   HQL SV  ++H   Q + V +      S+I      TS
Sbjct: 298 RVIQYISYYQSYHRSSSVINSHHQLTSVNIIQH---QSTSVIIAYHQSSSLIISHHQSTS 354

Query: 184 EVV 176
            ++
Sbjct: 355 VII 357


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 561 VAANTAHPIVDNSGRQRLALPLALLMSMGDGNHSPSGGPYARLPT 427
           VA++T H +++ S  + +   LA ++  G     P+  PYA++PT
Sbjct: 259 VASSTLHKLIEASITKTVPTILANMLINGSFVAQPTFLPYAKIPT 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,034,696
Number of Sequences: 59808
Number of extensions: 395698
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)