Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30105
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    32   0.40 
At2g43270.1 68415.m05378 F-box family protein contains Pfam PF00...    29   2.1  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 419 IFLVGRRAYGPPDGEWLP-SPMDISNARGRASR 514
           + + G + Y P  GEW+  SP+D+    GRA R
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRAGR 883


>At2g43270.1 68415.m05378 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 387

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 560 WRRTLHIQLSTIQVGSGWLCPWHC*CPWATVTTHHQVGRMLVCLQGK*FFFSKTVTITIC 381
           W +T  I L++I +      PW     W TV T  ++G ++ C   K  F   T T  IC
Sbjct: 258 WSKTYSITLASIIINH----PWES--SWFTVLTVSKLGNLVFCDNHKRLFKYNTETNEIC 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,623
Number of Sequences: 28952
Number of extensions: 267046
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)