Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30103
(480 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 24 0.74
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 23 1.7
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 3.0
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.9
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 6.9
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 6.9
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 6.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.1
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 9.1
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 24.2 bits (50), Expect = 0.74
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 50 CGVVNSHSSNGVLGG 94
CGV N H G+LGG
Sbjct: 329 CGVHNLHGMPGILGG 343
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 23.0 bits (47), Expect = 1.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 279 LMPNVVYGSSRSIGLSLPS 223
LMPN+ YGS++ LP+
Sbjct: 53 LMPNIGYGSNKKTRHMLPT 71
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 3.0
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 108 RHYDLNQAKELFEIFV-KEHNREYKDDADRELHYQSFKKHLAE 233
RH D N + E ++ +REYK D + + +KHL E
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRE 280
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 6.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 265 SIWIFSFNWFIS 230
+IW+FS W I+
Sbjct: 174 AIWLFSLGWTIA 185
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.0 bits (42), Expect = 6.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 142 SKFSSKNITGNTRMMPTESCI 204
+K+ IT + R++PT +CI
Sbjct: 378 AKYLRACITESLRLIPTTTCI 398
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.0 bits (42), Expect = 6.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 265 SIWIFSFNWFIS 230
+IW+FS W I+
Sbjct: 140 AIWLFSLGWTIA 151
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.0 bits (42), Expect = 6.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 265 SIWIFSFNWFIS 230
+IW+FS W I+
Sbjct: 50 AIWLFSLGWTIA 61
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 200 NLIVPCVLISSMALLGFTLP 219
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 268 NLIVPCVLISSMALLGFTLP 287
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 268 NLIVPCVLISSMALLGFTLP 287
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 285 NLLMPNVVYGSSRSIGLSLP 226
NL++P V+ S +G +LP
Sbjct: 237 NLIVPCVLIASMAVLGFTLP 256
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 59 VNSHSSNGVLGG 94
V+SHSSNG+ G
Sbjct: 76 VSSHSSNGIHTG 87
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,403
Number of Sequences: 438
Number of extensions: 2485
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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