Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30103
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC...    37   0.008
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC...    37   0.008
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ...    32   0.17 
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ...    32   0.23 
At1g29090.1 68414.m03561 peptidase C1A papain family protein con...    31   0.53 
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC...    30   0.93 
At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2 ...    29   1.2  
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    28   2.8  
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ...    28   3.7  
At4g10790.1 68417.m01759 UBX domain-containing protein low simil...    27   6.5  
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ...    27   8.7  
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ...    27   8.7  
At4g16190.1 68417.m02457 cysteine proteinase, putative contains ...    27   8.7  
At2g47860.2 68415.m05974 phototropic-responsive NPH3 family prot...    27   8.7  
At2g47860.1 68415.m05973 phototropic-responsive NPH3 family prot...    27   8.7  

>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 288

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54  ALLIATVVMASSAETDTPRHY-DLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLA 230
           ALL        S    TP H  + ++  ELFE ++ EH++ YK   ++   ++ F+++L 
Sbjct: 21  ALLCCAFARDFSIVGYTPEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLM 80

Query: 231 EINQLNEK 254
            I+Q N +
Sbjct: 81  HIDQRNNE 88


>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 355

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54  ALLIATVVMASSAETDTPRHY-DLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLA 230
           ALL        S    TP H  + ++  ELFE ++ EH++ YK   ++   ++ F+++L 
Sbjct: 21  ALLCCAFARDFSIVGYTPEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLM 80

Query: 231 EINQLNEK 254
            I+Q N +
Sbjct: 81  HIDQRNNE 88


>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 334

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +3

Query: 45  VSV-ALLIATVVMASSAETDTPR-HYDLNQAK--ELFEIFVKEHNREYKDDADRELHYQS 212
           VSV ++ +A  +++        R H  LN+    +  + ++ + +R YKD++++E+  + 
Sbjct: 2   VSVRSVFVALTILSMDLRISQARPHVTLNEQSIVDYHQQWMTQFSRVYKDESEKEMRLKV 61

Query: 213 FKKHLAEINQLN 248
           FKK+L  I   N
Sbjct: 62  FKKNLKFIENFN 73


>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 345

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 36  MNFVSVALLIATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSF 215
           M  V+V +++ T    S A + T    + +   +  E ++   +REY+D+ ++ +    F
Sbjct: 5   MVLVTVLIILFTGFRISQATSRTVIFREQSMVDK-HEQWMARFSREYRDELEKNMRRDVF 63

Query: 216 KKHLAEINQLNEK 254
           KK+L  I   N+K
Sbjct: 64  KKNLKFIENFNKK 76


>At1g29090.1 68414.m03561 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 355

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 18/71 (25%), Positives = 38/71 (53%)
 Frame = +3

Query: 42  FVSVALLIATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKK 221
           F+ V+L I ++ +  S  T     ++   A E  + ++   +R Y D+ ++++ +  FKK
Sbjct: 15  FMLVSLTILSMNLKVSQATSRVTFHEPIVA-EHHQQWMTRFSRVYSDELEKQMRFDVFKK 73

Query: 222 HLAEINQLNEK 254
           +L  I + N+K
Sbjct: 74  NLKFIEKFNKK 84


>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
           identical to papain-type cysteine endopeptidase XCP2
           GI:6708183 from [Arabidopsis thaliana]
          Length = 356

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 135 ELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEK 254
           ELFE ++    + Y+   ++ L ++ FK +L  I++ N+K
Sbjct: 49  ELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKK 88


>At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2
           subunit, putative similar to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 259

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 239 PIEREDPYTTFGINKFADYTPEEQQSRLGLRLP 337
           P+ R+D   TF I    DY PE+ QS  G   P
Sbjct: 135 PLARDDAGNTFNILDLQDYVPEDIQSISGFDPP 167


>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 393 FVWNSIPID*SRRTYVFLAGSLNPNLLCCSSGV*SANLLMPNV 265
           FVWN+I    SR ++  +A S+  ++LC S  V    L  P+V
Sbjct: 90  FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132


>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 348

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 48  SVALLIATVVMASSAETDTPRHYDLN-QAKELFEIFVKEHNREYKDDADRELHYQSFKKH 224
           S  + I T+ ++      T R       A E  E ++   NR Y D+ ++   +  FKK+
Sbjct: 3   STIIFILTIFLSYRTSLATSRGSLFEASAIEKHEQWMARFNRVYSDETEKRNRFNIFKKN 62

Query: 225 LAEINQLN 248
           L  +   N
Sbjct: 63  LEFVQNFN 70


>At4g10790.1 68417.m01759 UBX domain-containing protein low
           similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
           protein) {Homo sapiens}; contains Pfam profile PF00789:
           UBX domain
          Length = 480

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 407 HNTFISFGIAFR*TEVAELMSS*QAASIPTCSAVPQEYNQQI 282
           +  F+S+G + R +E  ++ +S +A+  P C+ V    NQ+I
Sbjct: 234 NENFVSWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAANQRI 275


>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 405

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 NREYKDDADRELHYQS 212
           N E+KD+ +R LHY+S
Sbjct: 10  NMEFKDEEERNLHYKS 25


>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 404

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 NREYKDDADRELHYQS 212
           N E+KD+ +R LHY+S
Sbjct: 10  NMEFKDEEERNLHYKS 25


>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
           similarity to papain-like cysteine proteinase isoform I
           GI:7381219 from [Ipomoea batatas]
          Length = 373

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 209 IIQETLGRDKPIEREDPYTTFGINKFADYTPEE-QQSRLGLR 331
           + +  L R +  +  DP    G+ +F+D TP+E ++  LGL+
Sbjct: 78  VFKANLRRARRNQLLDPSAVHGVTQFSDLTPKEFRRKFLGLK 119


>At2g47860.2 68415.m05974 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 517

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 114 YDLNQAKELFEIFVKEHNREYKDDADRE 197
           YD +  + +F +F+     EY+DD D E
Sbjct: 221 YDTDSVQRIFSMFLNLDECEYRDDDDDE 248


>At2g47860.1 68415.m05973 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 635

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 114 YDLNQAKELFEIFVKEHNREYKDDADRE 197
           YD +  + +F +F+     EY+DD D E
Sbjct: 339 YDTDSVQRIFSMFLNLDECEYRDDDDDE 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,707
Number of Sequences: 28952
Number of extensions: 170007
Number of successful extensions: 483
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)