Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30098
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       31   0.38 
09_02_0338 + 7426999-7428322,7428390-7428646                           28   3.6  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   4.7  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    27   4.7  
08_02_1290 - 25927667-25928950                                         27   8.2  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   8.2  
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389...    27   8.2  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   8.2  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 194 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 90
           LP  P      W PL   M  T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 152 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 12
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 37  RIARREQKLKEHGASSCISGKRGRRC 114
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 121 IWHWGSVDSISGSHARFQLSGN---SGRKHS 204
           ++ WGS+D+    H+RF  S N   +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440


>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 329 SDVENG*CLASPHGVGATMAAAVNCTQCCRPLNFRSMLV--QQRLCFLPL 186
           S   +G  L +PH   A  A     T+C  P      LV   QRL  +PL
Sbjct: 307 SFANSGDLLVTPHSHSAAAAGVAITTRCLYPRRLAGRLVGAAQRLLHVPL 356


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +1

Query: 43  ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 207
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>04_03_0985 -
           21438036-21438116,21438373-21438495,21438903-21438995,
           21439176-21439388,21439589-21439687,21440248-21440317,
           21442549-21442619,21442817-21442954,21443034-21443132,
           21444061-21444144,21444268-21444324,21444594-21444683,
           21444886-21445026,21445778-21445882,21445962-21446114,
           21446215-21446316,21446404-21446562,21447039-21447222,
           21447336-21447418,21447523-21447588,21447736-21447793,
           21447903-21448003,21448269-21448355,21449063-21449185,
           21449285-21449364,21449857-21450066,21450159-21450270,
           21450709-21450927,21451356-21451726,21451866-21451965,
           21452544-21452752,21453232-21453337,21453435-21453767
          Length = 1439

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 GSVDSISGSHARFQLSGNSGRKHSRCCTSI-LRKFSGRQHCVQLT 264
           GS DS+ G   R   + N   K   C T I LRK SG      +T
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSGNNDLSDVT 712


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 43  ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 156
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,183
Number of Sequences: 37544
Number of extensions: 222821
Number of successful extensions: 525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)