Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30098
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   27   6.4  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   6.4  
SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 112 CCNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRK 231
           C  ++H G+++ I     R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 359 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 264
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
 Frame = +1

Query: 109 RCC---NIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGRQHCVQLTAAAMV 279
           +CC   N  HW          A F   G S  +     T + R    + +C+++     +
Sbjct: 175 KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCRDGYFMTGLYRGNCDQIYCIEMFKCCKM 234

Query: 280 APTP*GDAKHHPFSTSLQDRTFSVLFGIKMHLNF 381
            PTP          T + D T + L  +  +L +
Sbjct: 235 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,828
Number of Sequences: 59808
Number of extensions: 244418
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)