Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30097
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0259 - 18851809-18852561,18852659-18852895                       27   5.7  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    27   5.7  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    27   7.6  

>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 264 GESRIFAVGSGLALPLALLKSMGNGNHSP 350
           G S+ F V S L+L LA+L S G G+H P
Sbjct: 2   GISKSFFVAS-LSLLLAVLASTGEGSHQP 29


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 288 GSGLALPLALLKSMGNGNHSPSGGPCTSLPAGAI 389
           GSG A P +   S G GN  PS  P  + P GA+
Sbjct: 106 GSGHASPKSPTPSCGKGNQPPS-RPTPTSPQGAV 138


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 325 PWATVTTHHQVGRVLVCLQ 381
           PW++VT HH  G+V++ ++
Sbjct: 904 PWSSVTKHHFKGKVVLIME 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,454,102
Number of Sequences: 37544
Number of extensions: 204462
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)