Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30097
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)              28   3.4  
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)               27   7.8  
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)                 27   7.8  

>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 344 VVTVAHGLQQCQGQSQAAAYRKDSRFACINNLI 246
           ++ +   L++C+G   A   R +S   C+NNL+
Sbjct: 403 IMAITQDLEECKGMVNALNKRNESDKDCVNNLM 435


>SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)
          Length = 1559

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 215 NENISYPNVFYPFRNHINYRPF 150
           N+ +S+ N F PFRN   + PF
Sbjct: 135 NDTLSFDNSFNPFRNKSTWTPF 156


>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
          Length = 469

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 343 WLPLPMDFSNARGRAKPLP 287
           WLPL MDF   RGR  P+P
Sbjct: 222 WLPLNMDF---RGRVYPIP 237


>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
          Length = 944

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 343 WLPLPMDFSNARGRAKPLP 287
           WLPL MDF   RGR  P+P
Sbjct: 699 WLPLNMDF---RGRVYPIP 714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,034
Number of Sequences: 59808
Number of extensions: 218060
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)