Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30097
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 138 VVESLLTNRKYWFMTSPLL 82
           +V+++L NR YW +T P+L
Sbjct: 843 IVKTILQNRSYWKITEPIL 861


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 343 WLPLPMDFSNARGRAKPLPTAKILDSPVL 257
           W PL  +  N RGRA  L T ++ ++ VL
Sbjct: 743 WSPLTPESQNIRGRAFNLKTGEMQETDVL 771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,356
Number of Sequences: 27780
Number of extensions: 171678
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)