Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30097
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66030.1 68414.m07494 cytochrome P450-related weak similarity...    27   4.8  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    27   6.4  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    27   6.4  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    27   6.4  

>At1g66030.1 68414.m07494 cytochrome P450-related weak similarity to
           cytochrome P450 [Catharanthus roseus] GI:4688670
          Length = 167

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 164 LYDFGTDKIHLDNLYFHFK 220
           +YDF  D +   NL FHFK
Sbjct: 59  IYDFSVDLLENSNLTFHFK 77


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 318 LKSMGNGNHSPSGGPCTSLPAGAIKXKKK 404
           ++ +GNGN SPS  P   L  G+   ++K
Sbjct: 363 VRVLGNGNRSPSRSPVRDLGNGSRSPREK 391


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 388 IAPAG-RLVHGPPDGEWLPLPMDFSN 314
           IAP+G R    P  GEW P P D S+
Sbjct: 319 IAPSGGRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 388 IAPAG-RLVHGPPDGEWLPLPMDFSN 314
           IAP+G R    P  GEW P P D S+
Sbjct: 319 IAPSGGRDRPNPSTGEWFPAPFDASS 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,529
Number of Sequences: 28952
Number of extensions: 153089
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)