Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30096
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.98 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   0.98 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 109 CNRCGI*CSVKSAGASGRQSAQKYYQLSC 23
           CN+C   C  KS   S  +S    Y+ SC
Sbjct: 261 CNKCDYTCVNKSMLNSHMKSHSNVYRYSC 289



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 109 CNRCGI*CSVK 77
           CN CG+ CS K
Sbjct: 501 CNMCGVECSDK 511


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 109 CNRCGI*CSVKSAGASGRQSAQKYYQLSC 23
           CN+C   C  KS   S  +S    Y+ SC
Sbjct: 19  CNKCDYTCVNKSMLNSHMKSHSNVYRYSC 47


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +3

Query: 87  HHMPHLLHHTRQPQSSRATP 146
           HH PHL H      ++   P
Sbjct: 40  HHSPHLNHAMHPYHANHVNP 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,810
Number of Sequences: 336
Number of extensions: 842
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)