Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30096
(537 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_23603| Best HMM Match : PH (HMM E-Value=1e-19) 28 4.2
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 860 TRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 890
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 876 TRLVNDMCTRLVNDMCTRLVNGMCTRLVNDM 906
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 884 TRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 914
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 900 TRLVNDMCTRLVNDMCTRLVNGMCTRLVNGM 930
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 908 TRLVNDMCTRLVNGMCTRLVNGMCTRLVSDM 938
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 956 TRLVNDMCTRLVNDMCTRLVNDMCTRLVNDM 986
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 868 TRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 898
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 892 TRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 922
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 916 TRLVNGMCTRLVNGMCTRLVSDMCTRLVNDM 946
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV M
Sbjct: 948 TQLVNGMCTRLVNDMCTRLVNDMCTRLVNDM 978
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M ++LV M +RLV M +RLV M
Sbjct: 940 TRLVNDMCTQLVNGMCTRLVNDMCTRLVNDM 970
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M ++LV M
Sbjct: 964 TRLVNDMCTRLVNDMCTRLVNDMCTQLVNGM 994
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M ++LV M +RLV M
Sbjct: 972 TRLVNDMCTRLVNDMCTQLVNGMCTRLVNDM 1002
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M ++LV M +RLV M +RLV M
Sbjct: 980 TRLVNDMCTQLVNGMCTRLVNDMCTRLVNDM 1010
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M ++LV M
Sbjct: 924 TRLVNGMCTRLVSDMCTRLVNDMCTQLVNGM 954
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M ++LV M +RLV M
Sbjct: 932 TRLVSDMCTRLVNDMCTQLVNGMCTRLVNDM 962
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 248 LVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
+V M +RLV M +RLV M +RLV M
Sbjct: 854 VVNDMCTRLVNDMCTRLVNGMCTRLVNDM 882
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 254 SKLVRHMLSRLVQSMLSRLVQSMLSRLVQSM 162
++LV M +RLV M +RLV M +RLV +
Sbjct: 988 TQLVNGMCTRLVNDMCTRLVNDMCTRLVNDV 1018
>SB_23603| Best HMM Match : PH (HMM E-Value=1e-19)
Length = 274
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 303 QELLRPCRRRLSTHR*GRCT-RSILRFILLYPDIAWR 410
+E+L+ CRRRLS+ G CT I R + +WR
Sbjct: 227 KEVLQKCRRRLSSSNRGSCTFEEIRRSSTTTANPSWR 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,673,768
Number of Sequences: 59808
Number of extensions: 117458
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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