Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30095
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 126 1e-29
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 118 2e-27
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 74 9e-14
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 32 0.36
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 28 5.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 7.8
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 27 7.8
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 7.8
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 126 bits (304), Expect = 1e-29
Identities = 57/101 (56%), Positives = 72/101 (71%)
Frame = +2
Query: 206 GIPQLKECP*VSIQTWIAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 385
G P LK + + KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFK 199
Query: 386 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDL 508
A+NFLWPFKL P GG +KK HYV+GGD GNRED IN+L
Sbjct: 200 EANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINEL 240
Score = 94.3 bits (224), Expect = 6e-20
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +3
Query: 90 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 254
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRG 155
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +1
Query: 1 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 117
+AR +G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 71 EARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 118 bits (285), Expect = 2e-27
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Frame = +2
Query: 206 GIPQLKECP*VSIQTWIAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFT 367
G P LK + + KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198
Query: 368 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDL 508
VG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+L
Sbjct: 199 VGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINEL 245
Score = 94.3 bits (224), Expect = 6e-20
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +3
Query: 90 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 254
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRG 154
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 1 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 117
+AR +G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 73.7 bits (173), Expect = 9e-14
Identities = 37/90 (41%), Positives = 52/90 (57%)
Frame = +2
Query: 206 GIPQLKECP*VSIQTWIAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 385
G P LK + + L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFR 201
Query: 386 YASNFLWPFKLNNPTGGWRKKTIHYVDGGD 475
ASNFL PFKL P + K + DG +
Sbjct: 202 EASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/54 (44%), Positives = 41/54 (75%)
Frame = +3
Query: 93 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 254
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKG 157
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -1
Query: 496 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFM 317
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 316 E---PLLNNAVGSD 284
LL+N +GSD
Sbjct: 1172 PKIYSLLSNLIGSD 1185
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 147 VRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGSPS*VDNVYQSLPTALLRRGSIN 323
V LNK +N + P+IA+G +L+ E Y P+ VD+VY S+P + + S +
Sbjct: 279 VALNKTEINQINHYNPFIAYG--SLEDTWEPKY--SLPTIVDDVY-SVPCPVEKTDSFS 332
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 299 IVEKRLHKHNIICVEDLIHEI 361
I K LH+H I VEDL+H +
Sbjct: 106 INHKHLHRHYSIGVEDLVHHV 126
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 254 IAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTG 433
+AKLS ++I + S L +H + + + E+ V E+F N+ W F + P
Sbjct: 237 VAKLSERKI-LGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCWGFLNSKPMV 295
Query: 434 G 436
G
Sbjct: 296 G 296
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 11 IVATTTFPGKPNWHLSSESVVSTKFH 88
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,334
Number of Sequences: 37544
Number of extensions: 361575
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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