Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30095
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 140 5e-34
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 30 1.1
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84) 29 3.5
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 3.5
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54) 27 8.0
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 140 bits (340), Expect = 5e-34
Identities = 66/101 (65%), Positives = 76/101 (75%)
Frame = +2
Query: 206 GIPQLKECP*VSIQTWIAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 385
G P LK + + K+ QR+ +T NSIVEK L KH IICVEDLIHEIFTVGE FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFK 199
Query: 386 YASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDL 508
ASNFLWPFKL++P GG+RKKT H+V+GGD GNREDKIN L
Sbjct: 200 EASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGL 240
Score = 103 bits (247), Expect = 1e-22
Identities = 47/55 (85%), Positives = 52/55 (94%)
Frame = +3
Query: 90 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 254
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRG 155
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +1
Query: 4 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 117
A+ GN+YVP EA+LAFVIRIRGIN VSPK K L
Sbjct: 72 AKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 454 NGLLAPTTSWIVQFEGPQEITRV-LELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWY 278
NG P + ++ P+ ++ + +E+F +DE + V E +LN DWY
Sbjct: 32 NGANNPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWY 91
Query: 277 TLSTQLGDPR 248
+LS + G+ +
Sbjct: 92 SLSGKQGEDK 101
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 30.3 bits (65), Expect = 1.1
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Frame = -2
Query: 534 SIYLNHPPERSLILSSRLPKSPPST**MVFLRQPPVG--LFNLKGHRKLLAYLNFSPTVK 361
S+ L PER +L S LP++P S + F + +G L +++ H + + L F+ +VK
Sbjct: 11 SLLLPPLPERMEVLHSLLPQAPESWESLTFGERKQLGIILSSIQDHTHVASLLGFTLSVK 70
Query: 360 ISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLAIHV--CILTHGHSL---SWGIPKQC 196
+ S ++ L ST L +V+ +LA H C+ + S+ S IP++C
Sbjct: 71 GA---SQDEV-----PLISTSLADVLMKTLLRNLAFHTERCLESIEKSITTSSESIPEEC 122
Query: 195 K 193
+
Sbjct: 123 E 123
>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
Length = 957
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 72 YQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVY 245
YQ T + + L + IN G +N++ VN+ R A + YP++KSVR +Y
Sbjct: 231 YQNGTTFFYEQVNLHKTVVINKGTDSIINES-VNLPRRARDSEKFVYPDIKSVRVTIY 287
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 329 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 451
+ C+ + E+ TV E F+ NFL FK+ P KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 414 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 286
LKGH K L+++P V + + +S +CLW + S + +V
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISSGISKDV 281
>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 378 FSPTVKISWMRSSTQIMLCLWSLFSTMLLEV-IGIRCPLSLAIHVCILTHGHSLSW 214
F T S M + T +L ++ + EV +GIRC L LA+ + +++ +L+W
Sbjct: 781 FIMTFWTSLMLTKTNRLLLIFKNKKVAVGEVALGIRCQLILALFLTLISMATTLAW 836
>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 350 IHEIFTVGEKFKYASNFLWPFKLNN 424
++ + T KF YA++ LW F NN
Sbjct: 58 LNRVITTTGKFSYATDDLWQFSCNN 82
>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
Length = 200
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -1
Query: 361 DLMDEVLNTDNVVFMEP 311
D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,185,398
Number of Sequences: 59808
Number of extensions: 411268
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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