Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30095
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 469 PVDIMNGLLAPTTSWIVQFEG 407
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 469 PVDIMNGLLAPTTSWIVQFEG 407
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 450 VFLRQPPVGLFNLKG 406
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 61  RIRGINQVSPKSVKFCNCLDC 123
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 IQTWIAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIF 364
           IQTW   L GQR+   S S    ++ + N++ V+  +   F
Sbjct: 418 IQTWDGVLMGQRLLTMSCS---DKIARWNVLGVQGALLSYF 455


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 57  HPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 197
           H   W Q  F  ++ +  +      N G+  RL   T  + RI + Y
Sbjct: 2   HHRMWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGY 48


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 437 NHQLDCSI*RATGNYS 390
           N+  DC+I  +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 314 ASSQQCCWK*LVYVVHSAW 258
           A++   CW  + Y+V  AW
Sbjct: 65  AAAVMSCWMNVYYIVILAW 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,374
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)