Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30094
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ... 28 1.0
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 2.4
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 27 2.4
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 27 3.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 3.1
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 4.1
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 5.5
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 5.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 9.5
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 9.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.5
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 25 9.5
>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 346 DRNNHRKKSLLPKHMLVSEFSDVETNEILDDT 441
+ +N+R SL+ K M VSE E I+DD+
Sbjct: 35 NNSNYRNDSLIRKEMFVSELVLKEVQRIVDDS 66
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 468 VSEQRLCSLRIRPEEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAEC 611
VSE++ S+ + + IDD ++ + D I++++ +C+H PK + C
Sbjct: 109 VSEKKP-SMPVIQDPIDDSLEKE--DGLIRRSMTSLCRHGPKGMCDYC 153
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 458 TRRPFTVSSRISFVSTSLNSETSMCLGRSDFFLWLFLSPLNVXSR 324
T +P+T S +S T L S +CL RSD F + + L++ +
Sbjct: 347 TGQPWT--STLSVTQTDLASVLEICLQRSDPFTKIIIDELSILDK 389
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 453 ATVHRVVQDLVRFDVTEFRNQHVFGQKRLLPVVVPVASQ 337
A+ +R+V + DVTE R HV GQ P + SQ
Sbjct: 388 ASEYRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPYSQ 426
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 21 VDVNSEKSNCPLCLFAVEQLESVLKNNRSEENIRKALDGLCTRLSQKLQSECIDFVDTYS 200
+DV++E +CL + ++ + + E R +L GL ++ + F +
Sbjct: 1736 IDVSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGLNASSEKEARDYLNKFAGNKT 1795
Query: 201 SQLVEMLVADMNAKEI 248
+L +ML D N +I
Sbjct: 1796 DELYQMLCNDPNVFDI 1811
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 119 SQGSGRSLHAALPETAERVHRLRGHVLESARRDAGGRHER 238
+ G G + H +LP +L G++L+ + +GG ++
Sbjct: 268 ASGYGSASHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDK 307
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 432 QDLVRFDVTEFRNQHVFGQKRLLPVVVPVASQCRFAWN 319
Q++ F V E +N+H +K V+PV R WN
Sbjct: 433 QEIPSFAVFENKNRHTHEKKSSEKEVIPVYITYRKEWN 470
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 147 RLSQKLQSECIDFVDTYSSQLVEMLVADMNAKEICVS*SCV 269
++ + L +C D ++ +S++V ML+ ++K + V +CV
Sbjct: 74 KICKTLVQKCRDNINVMASEVVNMLLVASSSKNLEVLSACV 114
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 421 NEILDDTVNGRRVSHKSQSNVCVLCEFV 504
N+I + +NG RV K + + C +FV
Sbjct: 452 NKIKQEILNGERVDEKKERDGCDALDFV 479
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 414 RNERDPGRHGERSPRLAQVSEQRL--CSLRIRPEEIDDQIKDKHNDDEIKKAVHGI 575
R++RDP H E + VS + L + R+ + +D++ +E + A +GI
Sbjct: 20 RSQRDPQYHDENATERVLVSAETLNKTARRLNRQTLDEEYGSTIRPNEGEAANYGI 75
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 501 RPEEIDDQIKDKHNDDEIKKAVHGICKHM 587
+PEE +D+ D + DD ++ A + HM
Sbjct: 329 QPEEAEDEYIDVNTDDSLESAEYRWRSHM 357
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 78 LESVLKNNRSEENIRKALDGLCTRLSQKLQSECIDFVDTYSSQLVEMLVAD 230
++ + N+R + KAL+ L LSQK + E +DF+ + M +AD
Sbjct: 8 IKKLAANDRKTRD--KALESLQRFLSQKKKFERLDFLKLWKGLFYCMWMAD 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,464
Number of Sequences: 5004
Number of extensions: 43745
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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