Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30094
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 34 0.11
02_05_0141 + 26225644-26225880 32 0.35
07_03_0565 - 19561078-19561425,19562253-19563746 31 0.61
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 30 1.4
01_06_1137 - 34801750-34801955,34802586-34802856,34802961-348031... 30 1.4
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 29 3.2
03_01_0632 - 4647271-4648704 29 4.3
08_01_0433 + 3794440-3794948,3795696-3796707 28 5.6
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 28 5.6
06_01_1022 + 7992901-7994676 28 7.5
03_05_0828 - 28021095-28021694 28 7.5
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 7.5
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 27 9.9
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 27 9.9
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 146 AALPETAERVHRLR---GHVLESARRDAGGRHEREGDLRVLKLCRDQLHDP 289
A LP+ R RLR GH + + D G R R GD+R L+ R H P
Sbjct: 352 AVLPDAVRRRRRLRVEEGHRVADHQHDDGRRAVRRGDVRALRRRRLPAHGP 402
>02_05_0141 + 26225644-26225880
Length = 78
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 397 KPACVWAEATSSCGCSCRLSMSXRVELVYGRVGQLEGI 284
KP WAEA +SC C R+ LV+ VG +EG+
Sbjct: 45 KPRATWAEALASCSMQC-----PRLPLVHVPVGGIEGV 77
>07_03_0565 - 19561078-19561425,19562253-19563746
Length = 613
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 215 DAGGRHEREGDLRVLKLCRDQLHDPLKLTHSSIDKFHAXRH*EA--TGTTTGRSRFCPNT 388
DAGGRH G L VL + ++HD ++ D+ A A G +R P T
Sbjct: 234 DAGGRHLPPGSLLVLHRGKREVHDAFAAAAAAGDEDSATSDAAAYRPGLNISSARLVPRT 293
Query: 389 CW 394
W
Sbjct: 294 TW 295
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 69 VEQLESVLKNNRSEENIRKALDGLCTRLSQKLQSECIDFVDTYS 200
+++L V K+NR + L LCT+L + I +VD Y+
Sbjct: 244 LDELRCVAKHNRVAKLFNLQLHALCTKLRGEFAGASITYVDIYT 287
>01_06_1137 -
34801750-34801955,34802586-34802856,34802961-34803153,
34803754-34803834,34803914-34804039,34804119-34804269,
34804346-34804490,34805088-34805279
Length = 454
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 462 AQVSEQRLCSLRIRPEE-IDDQIKDKHNDDEIKKAVHG 572
++VS QR+C L RP+E I +K+ND I +V+G
Sbjct: 111 SRVSNQRICFLNGRPDEVIRSLFYNKNNDSLITVSVYG 148
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +3
Query: 69 VEQLESVLK--NNRSEENIRKALDGLCTRLSQKLQSEC-IDFVDTYS 200
VE ++S+ K NN + +++R +DG+ +R S ++S+ +D ++ YS
Sbjct: 204 VELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELDMMNIYS 250
>03_01_0632 - 4647271-4648704
Length = 477
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -1
Query: 591 SACVCICREQLS*FRRRYVCLLFGRRFPQDEFAKNTDVALRLVRDAATVHRVVQD 427
++C+ +L+ RR LL +R +DE AK D+ + V+D V +++
Sbjct: 256 TSCMKSTESELAETRRENARLLESQRSGRDEIAKLRDILRQAVKDTKVVKEALEE 310
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 505 GRIRKEHRRCSETCARRGDRSPCRPGSRS 419
GRIR+ C RRG R C PG RS
Sbjct: 11 GRIRRRRHALRRACWRRGGR--CEPGWRS 37
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 DEIKKAVHGICKHMPKS-VSAECDQFVEKYADLV 644
DE+++AV G+ KH P + VS C ++K D V
Sbjct: 125 DEMREAVRGVAKHFPTAIVSGRC---IDKVFDFV 155
>06_01_1022 + 7992901-7994676
Length = 591
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 447 RSPRLAQ-VSEQRLCSLRIRPEEIDDQIKDKHNDDEIKKAVH-GICKHMPKSVSAECDQF 620
R RL + + EQ L S+++R D+Q++ + E+ KAV G+ KHM KS C F
Sbjct: 293 RMNRLPEAMREQMLASVQLR-FRTDEQLQQEMLS-ELPKAVRSGVMKHMFKSAIESCYLF 350
>03_05_0828 - 28021095-28021694
Length = 199
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 505 GRIRKEHRRCSETCARRGDRSPCRPGS 425
G+++ RRCS ARRGDR R GS
Sbjct: 81 GQVKGRPRRCSG--ARRGDRPAARAGS 105
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 36 EKSNCPLCLFAVEQLESVLKNNRSEENIRKALD 134
+ + CP+C VE+L + NN++EE + + D
Sbjct: 370 QTTRCPICRQPVERLLEIKVNNKAEEQQQPSPD 402
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 411 RRNERDPGRHGERSPRLAQVSEQRLCSLRIRPEEIDDQIKDKHNDDEIKKAVHGICKHMP 590
+R +R GRHG PRL ++L +L D+ ++ +DDE V+ + +P
Sbjct: 35 KRGDRRGGRHG---PRLPTALRRQLDALGPGTSRGSDEDEEAGSDDEGAHDVYEYEEGVP 91
Query: 591 KSVSAECDQF--VEKY 632
+ + + ++ VEKY
Sbjct: 92 EEEAGKNGRYDAVEKY 107
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 110 GEHSQGSGRSLHAALPETAERVHRLRGHVLESARRDAGGRHEREGDLRV-LKLCRDQLHD 286
G S GSGR+LH + +AE S GG +REG R ++ R QL
Sbjct: 40 GRRSGGSGRALHRSAHLSAEDDGHAPPPASCSKDDKIGGGGKREGSQRSRMRKYRSQLEQ 99
Query: 287 PLKLTHSSIDK 319
+K +++
Sbjct: 100 EVKKLQRQLEE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,860
Number of Sequences: 37544
Number of extensions: 337262
Number of successful extensions: 1256
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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