Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30094
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   7.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 366 LPVVVPVASQCRFAWNLSMDEWVSLR 289
           +PV VPV   C      SM+ W+S++
Sbjct: 361 IPVPVPVPIYCGNFPPRSMEPWISMQ 386


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 631 YFSTNWSHSALTDFGMC 581
           Y++TN SH+ L+  G C
Sbjct: 126 YYTTNESHACLSTGGSC 142


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 576 ICREQLS*FRRRYVCLLFGRRFPQDEFAKNTDVALRLVRDAATVHRVVQDLVRF--DVTE 403
           ICR ++  F      L+   RFPQ++F K + + + +  D        +D   +  DVT 
Sbjct: 147 ICRPKIHVFSLHDNKLITMYRFPQNQF-KESSLFVTIAVDVRDTEDKCKDTFAYIADVTG 205

Query: 402 F 400
           F
Sbjct: 206 F 206


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 427 ILDDTVNGRRVSHKSQSNVCVL 492
           +LD T+N ++   +    VCVL
Sbjct: 18  MLDHTINSKKTIMRILKEVCVL 39


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 427 ILDDTVNGRRVSHKSQSNVCVL 492
           +LD T+N ++   +    VCVL
Sbjct: 1   MLDHTINSKKTIMRILKEVCVL 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,607
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)