Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RK05 Cluster: Membrane protein pf12; n=3; Plasmodium ...    31   5.7  
UniRef50_A4JRJ8 Cluster: Two component transcriptional regulator...    31   9.9  
UniRef50_O96902 Cluster: Putative uncharacterized protein; n=2; ...    31   9.9  
UniRef50_A2EEJ6 Cluster: Putative uncharacterized protein; n=2; ...    31   9.9  
UniRef50_Q9ZPV5 Cluster: Nucleolar complex protein 2 homolog; n=...    31   9.9  

>UniRef50_Q7RK05 Cluster: Membrane protein pf12; n=3; Plasmodium
           (Vinckeia)|Rep: Membrane protein pf12 - Plasmodium
           yoelii yoelii
          Length = 342

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 NTSNNLYGVTLQGHD*HITSVVIKKNFFVPSIYIHSYCF 242
           N +N LY  +   +    TS++IK N    SIYIH Y F
Sbjct: 301 NYANQLYATSNSNYYEKTTSIMIKINKLFCSIYIHIYIF 339


>UniRef50_A4JRJ8 Cluster: Two component transcriptional regulator,
           winged helix family; n=5; Proteobacteria|Rep: Two
           component transcriptional regulator, winged helix family
           - Burkholderia vietnamiensis (strain G4 / LMG 22486)
           (Burkholderiacepacia (strain R1808))
          Length = 241

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 154 VTPYKLLEVLSRCRITLRFPSQLLGTKKVV 65
           V P++L E+ +RCR  LR P   LGT   V
Sbjct: 100 VKPFELRELTARCRALLRRPGACLGTTLAV 129


>UniRef50_O96902 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum (Slime mold)
          Length = 800

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 75  LVPNNWEGNLRVIRHRDNTSNNLYGVT 155
           LV NN  GNL ++   +N++NNL G++
Sbjct: 607 LVGNNSSGNLTLLNSNNNSNNNLIGIS 633


>UniRef50_A2EEJ6 Cluster: Putative uncharacterized protein; n=2;
            Eukaryota|Rep: Putative uncharacterized protein -
            Trichomonas vaginalis G3
          Length = 5901

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 159  VRSPRISYWKYYHDAELL*DFLPNC*VLRKLYKERCSH 46
            ++SPR   +K+Y D   +   LPN  VL+KLY++  SH
Sbjct: 2310 LKSPRYHVFKWYIDNSYIKPLLPND-VLKKLYEDIKSH 2346


>UniRef50_Q9ZPV5 Cluster: Nucleolar complex protein 2 homolog; n=5;
           core eudicotyledons|Rep: Nucleolar complex protein 2
           homolog - Arabidopsis thaliana (Mouse-ear cress)
          Length = 779

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 157 KVTPYKLLEVLSRCRITLRFPSQLLGTKKVVQRTM*SQPWK 35
           K+  Y L E+    R  LRFP    GTK+ +     ++PWK
Sbjct: 201 KIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWK 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,186,773
Number of Sequences: 1657284
Number of extensions: 5719302
Number of successful extensions: 11380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11378
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)