Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   4.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.1  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    24   7.1  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    24   7.1  

>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 107 SKISFPIVRY*ESCTKNDVVTTLEKKCKCRK 15
           +KISF  +R  ++C   ++   L+ +C+ +K
Sbjct: 43  NKISFDTIRSKQNCRLKEIYCRLKIRCRLKK 73


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 237  NNYVCKYWGQRNSFL 193
            NNY+ K WG R S++
Sbjct: 2012 NNYMIKSWGSRLSYI 2026


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 48  DYIVLCTTFLVPNNWEGNLRVIRHRDNTSNNLYGVTLQGHD*HITSVVIKKNF 206
           +Y+V      V   WE  + +++  DN S   Y +     D  I+++V+ +NF
Sbjct: 521 EYLVRKNKETVEEKWENVMELVQQSDNISCIFYEL-----DYKISTIVLLQNF 568


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 195 KKNFFVPSIYIHSYCFNNAT 254
           +K  FVP + IHS C+   T
Sbjct: 157 RKTNFVPLVRIHSECYTGET 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,526
Number of Sequences: 5004
Number of extensions: 27063
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)