Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853...    27   3.8  
10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471           27   6.7  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    27   6.7  
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178...    27   6.7  

>03_05_0999 -
           29583959-29584711,29584797-29585021,29585163-29585360,
           29585472-29586056
          Length = 586

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +3

Query: 54  IVLCTTFLVPNNWEGNLRVIRHRDNTSNN---LYGVTL-QGHD*HITSVVIKKNFFV 212
           + L  +FLVP+NW G L V+ + ++   N   L+ + + +    ++TSV +  + FV
Sbjct: 348 VKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARAASAYLTSVALAVSAFV 404


>10_05_0067 + 8756044-8756075,8756180-8756357,8756800-8757471
          Length = 293

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 172 QSCP-CKVTPYKLLEVLSRCRITLR 101
           Q CP C+VT    + +L+ CR+T R
Sbjct: 263 QLCPLCRVTQESAVHLLTSCRVTCR 287


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 236 ITMYVNTGDKEILFYNDRSDMS 171
           I M ++   KE+L+Y DR+D+S
Sbjct: 188 IVMAIDPETKELLYYEDRADVS 209


>01_06_1300 +
           36116511-36116636,36116672-36116734,36117782-36117833,
           36118144-36118224,36118651-36118775,36118831-36118934,
           36119487-36119615,36119899-36121054
          Length = 611

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 78  VPNNWEGNLRVIRHRDNTSNNLYGVTLQGHD 170
           + N+W  +LR  +   NTSNN+    L  HD
Sbjct: 232 IKNHWNSSLRKKQDMYNTSNNMVVPKLLVHD 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,555
Number of Sequences: 37544
Number of extensions: 141010
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)