Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    27   6.0  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    26   7.9  

>Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical
           protein F58E6.3 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 184 EVICQSCPC-KVTPYKLLEVLSRCRITLRFPSQLL 83
           +++C  CP  + T  K  + LS C I + FP  +L
Sbjct: 130 DMVCMMCPTGRTTLSKASKALSACHIKICFPGTIL 164


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 VIVLTTLLCYLCDILIIQYY 291
           VIV+T  L + C I ++QYY
Sbjct: 261 VIVITMALLFECTIFVLQYY 280


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 217 LGTKKFFFITTEVICQSCPCK--VTPYKLLE--VLSRCRITLRFPSQLLGTK 74
           +GT+ +FF TTE++C S P    V+  KL +  +  RCR      S +L T+
Sbjct: 270 IGTELWFF-TTEIMCISSPWSLLVSSSKLRKEFIPKRCRKRQENISSMLSTR 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,616,606
Number of Sequences: 27780
Number of extensions: 146446
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)