Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    20   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 160 CKVTPYKLLEVLSRCRITLRFPSQLLG 80
           C+V P K ++  + C    + PS+++G
Sbjct: 137 CEVRPIKRVKDSTNCNCGWKNPSRIVG 163


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 217 VFTYIVIVLT 246
           +FTYI+I++T
Sbjct: 417 IFTYIIILIT 426


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 54  IVLCTTFLVPNNWEGNLR 107
           IV+C TF   + W    R
Sbjct: 18  IVMCQTFTYSHGWTNGKR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,073
Number of Sequences: 438
Number of extensions: 2157
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)