Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30091
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1282 + 27528159-27529148,27529549-27529614 27 2.5
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 27 2.5
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 27 2.5
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 27 3.3
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 4.3
03_02_0028 - 5118621-5119448 27 4.3
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 26 5.7
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 26 5.7
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 26 5.7
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 26 5.7
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 26 5.7
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 26 5.7
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 26 7.6
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 342 GPSIVHRKCF 351
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 365 GPSIVHRKCF 374
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 132 ITIISYVQLN*RRLQA*IEQPAAGCWR 52
+T + +V L RLQ +E PAA CWR
Sbjct: 245 LTFVPFVVL---RLQKFLESPAATCWR 268
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 67 RGLLEAATRGAFRSTSCVQWR 5
RG +AATRGA RS+S W+
Sbjct: 3 RGESKAATRGANRSSSSSSWK 23
>03_02_0028 - 5118621-5119448
Length = 275
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 5 PPLYTGSASKRTARRCLQQPAAG 73
PP + GS +R RR QQP G
Sbjct: 31 PPFFPGSCPRRVPRRRPQQPPPG 53
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GP+IVHRKCF
Sbjct: 371 GPAIVHRKCF 380
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GP+IVHRKCF
Sbjct: 382 GPAIVHRKCF 391
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GP+IVHRKCF
Sbjct: 368 GPAIVHRKCF 377
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GP+IVHRKCF
Sbjct: 368 GPAIVHRKCF 377
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVH+KCF
Sbjct: 389 GPSIVHKKCF 398
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GP+IVHRKCF
Sbjct: 368 GPAIVHRKCF 377
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 44 RRCLQQPAAGCSIQACNL 97
RR L+ PAAGCS CNL
Sbjct: 284 RRALEPPAAGCS--KCNL 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,761,657
Number of Sequences: 37544
Number of extensions: 90818
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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