Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30091
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 27 2.3
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 27 2.3
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 27 2.3
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 27 2.3
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 27 2.3
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 27 2.3
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 27 2.3
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 27 2.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 3.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 3.0
U13070-12|AAK67222.1| 405|Caenorhabditis elegans Hypothetical p... 26 7.0
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 25 9.2
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 366 GPSIVHRKCF 375
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 366 GPSIVHRKCF 375
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 323 GPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 353 GPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1 GPSIVHRKCF 30
GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 89 KPELSSRPRAAGGSDARCV*KHFLCTME 6
+P + R A GG DA+C+ K + C E
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE 3651
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 89 KPELSSRPRAAGGSDARCV*KHFLCTME 6
+P + R A GG DA+C+ K + C E
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE 3651
>U13070-12|AAK67222.1| 405|Caenorhabditis elegans Hypothetical
protein F01F1.11 protein.
Length = 405
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 103 LTEITSLN*AAGRGLLEAATRGAFRSTSCVQWR 5
L E+ + G+L + RG + TSCV W+
Sbjct: 332 LNELREMPFCLNTGILLSPLRGREQGTSCVTWK 364
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 253 FSTYNHHS*DYKKSFGECSTGPAV 182
F YN S K+ GECST PAV
Sbjct: 518 FVEYNSRS-SRKRKAGECSTPPAV 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,554,046
Number of Sequences: 27780
Number of extensions: 75155
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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