Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30091
         (322 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A...    27   2.1  
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S...    27   2.1  
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A...    27   2.1  
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497...    27   2.1  
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496...    27   2.1  
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A...    27   2.1  
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica...    27   2.8  
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ...    26   6.5  
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A...    26   6.5  
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A...    26   6.5  

>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
           Actin 4 {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
           SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
           Actin 3 {Arabidopsis thaliana}; supported by full-length
           cDNA: Ceres: 19581.
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
           Actin 12 {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
           Actin 11 {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
           Actin 1 (Actin 3) {Arabidopsis thaliana}
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 368 GPSIVHRKCF 377


>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
           to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
           GI:21427469; contains Pfam profile PF00022: Actin
          Length = 363

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPS+VHRKCF
Sbjct: 354 GPSVVHRKCF 363


>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 556

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 104 INGDYKPELSSRPRAAGGS 48
           IN D+ P+L+SRP +AGG+
Sbjct: 211 INNDF-PQLTSRPGSAGGT 228


>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
           Actin 2 {Arabidopsis thaliana}; nearly identical to
           SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
           to At1g49240
          Length = 377

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GP IVHRKCF
Sbjct: 368 GPGIVHRKCF 377


>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
           Actin 8 {Arabidopsis thaliana}; nearly identical to
           SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
           to At3g18780
          Length = 377

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GP IVHRKCF
Sbjct: 368 GPGIVHRKCF 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,149,186
Number of Sequences: 28952
Number of extensions: 66083
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)