Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30090
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   5.1  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.1  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.7  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 477 EERPRTGYFDNLLKPRRKRARSLVVKQQGITKSATN 584
           E+ P   YF++ +K  + +A S++ K      S+TN
Sbjct: 105 EKFPELSYFNDAVKNNKTKALSIIQKLLSTVDSSTN 140


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 322 LDDKIICTRSRTPFVHFGNVRFTRVN 245
           L + I     R+ F+HFG + +T+VN
Sbjct: 183 LPENITTQELRSYFLHFGEILYTQVN 208


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 404 GRNDDSIYGEIGDYMPGERRSDRRGG 481
           GR+D+  Y   G+Y    R   RRGG
Sbjct: 213 GRDDERRYAPRGEYRRNNRDEYRRGG 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,369
Number of Sequences: 5004
Number of extensions: 37646
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)