Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30090
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36365| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              29   3.0  
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       28   7.0  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_865| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.3  

>SB_36365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 533 PLPSRFQQVIKVSGSRPLLPSCRSGALPACS 441
           PLP  FQ ++K++  R  LP   +G +  CS
Sbjct: 18  PLPRTFQAIVKMAAFRKSLPEDSTGRVEMCS 48


>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 365 YVFRASNMRRSASVSRRQDH---LHSKPNSFRPFRERPLY 255
           Y + AS  R  AS+ ++  H   +H++P   +PF++ PL+
Sbjct: 487 YTYFASFKRHQASMHKKPLHKEVMHNEPEHNKPFKQEPLH 526


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 353 ASNMRRSASVSRRQDHLHSKPNSFRPFRERPLYPSQRCGYIGIDCAFFVEL 201
           ASN +    + + + HL   P +FR + + P   ++R   IG DCA F+ L
Sbjct: 143 ASN-KNECEICKYEYHLQRTPKTFRQWLKNPRSRTERRYIIG-DCACFIIL 191


>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -3

Query: 348 KYEKICVS--FSTTRSFALEAEL--LSSISGTSALPESTLWVYRNRLCLLRRARPRTPY- 184
           K   +CV+     T +F L  +L  ++ + G+  +PE+ + V+  + C LR A  +T Y 
Sbjct: 150 KLHVVCVANPAEMTGNFLLFQQLCDMNGLGGSVYVPEAPISVHSVQNCFLRLA--QTHYI 207

Query: 183 DREQTFRCGQLSCSFVL 133
             E    CG LS    L
Sbjct: 208 SYEGVLNCGHLSSKITL 224


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 518  TEKEEGPIPRRQATGNNEERDKRSAALLS 604
            +E +E P+PR      N E+  R  ALLS
Sbjct: 1226 SESDEAPVPREDDDNENLEKKLREKALLS 1254


>SB_865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 537 GPSSFSVSTGYQSIRFAASPPLLSERRSPGM 445
           G ++ S STG  S R   SP +LS RR P M
Sbjct: 7   GGAALSTSTGITSNRPDKSPGILSTRRQPLM 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,626
Number of Sequences: 59808
Number of extensions: 303112
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)