Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30090
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    46   3e-05
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    30   1.5  

>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +3

Query: 141 KNKKVVRSEMFAPGRMAYVVELDEEGTIDSDIPTTLTRVKRTFPK 275
           KN+  + +++FA GRMAYVVEL++E   ++DIPTTL R     P+
Sbjct: 221 KNEVPLHNQLFAKGRMAYVVELEDE---ETDIPTTLLRSLHDLPR 262



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
 Frame = +2

Query: 263 DVPEMDERSSASSANDLVVEKLTQIFSYLR-----------HGRHXXXXXXXXXXXXXGR 409
           D+P  +   S   AN+L++ KL+ + S+LR             +              G 
Sbjct: 259 DLPRAESAQSIQ-ANNLIILKLSHVLSHLRAEPKKKKKEEFRVQLGSRDAPGAAAAAPGA 317

Query: 410 NDDSIYGEIGDYMPGERRSDRR 475
             DSIY ++ DY+P  +  D R
Sbjct: 318 KGDSIYDDLDDYVPSRKSRDSR 339


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 341 RRSASVSRRQDHLHSKPNSFRPFRERPLYPSQ 246
           RRS S SRR+   HS+  S  P R+RP+  S+
Sbjct: 333 RRSESTSRRRSGRHSRSRSRSPPRKRPVRRSR 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,108
Number of Sequences: 27780
Number of extensions: 222207
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)