Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30090
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26460.1 68415.m03175 RED family protein similar to Red prote...    43   1e-04
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    27   7.6  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    27   7.6  

>At2g26460.1 68415.m03175 RED family protein similar to Red protein
           (RER protein) (Swiss-Prot:Q9Z1M8) [Mus musculus]
          Length = 585

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +3

Query: 93  FKTQMGKNIFDMILEQKNKKVVRS-EMFAPGRMAYVVELDEEGTIDSDIPTTLTRVKRTF 269
           F+T   K+++  I+  K + +++S EMF PGRM +V   D EG    DIPTTL R K   
Sbjct: 128 FRTIAAKSVYQWIV--KPQTIIKSNEMFLPGRMTFV--YDMEGGYTHDIPTTLYRSKADC 183

Query: 270 P 272
           P
Sbjct: 184 P 184


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
            (ZWICHEL) identical to kinesin-like protein GI:2224925
            from [Arabidopsis thaliana]
          Length = 1260

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 162  SEMFAPGRMAYVVELDEEGTIDSDIPTTLTRVKRTFPKWTKGV 290
            S+ F+    AY+VEL ++  +D  +P +  R+K    K +KG+
Sbjct: 1004 SKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 1046


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
            (ZWICHEL) identical to kinesin-like protein GI:2224925
            from [Arabidopsis thaliana]
          Length = 1259

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 162  SEMFAPGRMAYVVELDEEGTIDSDIPTTLTRVKRTFPKWTKGV 290
            S+ F+    AY+VEL ++  +D  +P +  R+K    K +KG+
Sbjct: 1003 SKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 1045


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,047
Number of Sequences: 28952
Number of extensions: 209444
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)